RNA–Protein interactions for RNA: ENST00000409357.5

NIF3L1-204, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,679 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-204ENST00000409357 KRTAP8-1Q8IUC2 63 aa4.33□□□□□ -1.72
NIF3L1-204ENST00000409357 SYNE2Q8WXH0 6885 aaKnown RBP4.3□□□□□ -1.72
NIF3L1-204ENST00000409357 MACF1Q9UPN3 7388 aaKnown RBP4.29□□□□□ -1.72
NIF3L1-204ENST00000409357 KRTAP19-6Q3LI70 58 aa4.29□□□□□ -1.72
NIF3L1-204ENST00000409357 LCE3AQ5TA76 89 aa4.26□□□□□ -1.73
NIF3L1-204ENST00000409357 SPRR2GQ9BYE4 73 aa4.26□□□□□ -1.73
NIF3L1-204ENST00000409357 MT1BP07438 61 aa4.18□□□□□ -1.74
NIF3L1-204ENST00000409357 KRTAP10-12P60413 245 aa4.17□□□□□ -1.74
NIF3L1-204ENST00000409357 KRTAP19-8Q3LI54 63 aa4.13□□□□□ -1.75
NIF3L1-204ENST00000409357 KRTAP12-3P60328 96 aa4.1□□□□□ -1.75
NIF3L1-204ENST00000409357 MT3P25713 68 aa4.06□□□□□ -1.76
NIF3L1-204ENST00000409357 KRTAP10-5P60370 271 aa4.05□□□□□ -1.76
NIF3L1-204ENST00000409357 KRTAP6-3Q3LI67 103 aa4.05□□□□□ -1.76
NIF3L1-204ENST00000409357 KRTAP2-2Q9BYT5 123 aa4.03□□□□□ -1.76
NIF3L1-204ENST00000409357 MUC12Q9UKN1 5478 aa4.02□□□□□ -1.77
NIF3L1-204ENST00000409357 KMT2DO14686 5537 aa3.99□□□□□ -1.77
NIF3L1-204ENST00000409357 NEBP20929 6669 aa3.98□□□□□ -1.77
NIF3L1-204ENST00000409357 LCE1FQ5T754 118 aa3.97□□□□□ -1.77
NIF3L1-204ENST00000409357 KRTAP2-3P0C7H8 128 aa3.94□□□□□ -1.78
NIF3L1-204ENST00000409357 KRTAP2-4Q9BYR9 128 aa3.94□□□□□ -1.78
NIF3L1-204ENST00000409357 KRTAP2-1Q9BYU5 128 aa3.94□□□□□ -1.78
NIF3L1-204ENST00000409357 MT1XP80297 61 aa3.93□□□□□ -1.78
NIF3L1-204ENST00000409357 MDN1Q9NU22 5596 aa3.92□□□□□ -1.78
NIF3L1-204ENST00000409357 LCE3CQ5T5A8 94 aa3.91□□□□□ -1.78
NIF3L1-204ENST00000409357 KRTAP5-9P26371 169 aa3.9□□□□□ -1.79
NIF3L1-204ENST00000409357 KRTAP20-1Q3LI63 56 aa3.79□□□□□ -1.8
NIF3L1-204ENST00000409357 KRTAP10-7P60409 375 aaPredicted RBP3.78□□□□□ -1.8
NIF3L1-204ENST00000409357 SPRR2FQ96RM1 72 aa3.78□□□□□ -1.8
NIF3L1-204ENST00000409357 SPRR2EP22531 72 aa3.72□□□□□ -1.81
NIF3L1-204ENST00000409357 SPRR2BP35325 72 aa3.72□□□□□ -1.81
NIF3L1-204ENST00000409357 SPRR2AP35326 72 aa3.72□□□□□ -1.81
NIF3L1-204ENST00000409357 KRTAP9-6A8MVA2 160 aa3.71□□□□□ -1.81
NIF3L1-204ENST00000409357 KRTAP19-5Q3LI72 72 aa3.71□□□□□ -1.82
NIF3L1-204ENST00000409357 SPRR2DP22532 72 aa3.59□□□□□ -1.83
NIF3L1-204ENST00000409357 GPR98Q8WXG9 6306 aa3.53□□□□□ -1.84
NIF3L1-204ENST00000409357 KRTAP19-7Q3SYF9 63 aa3.51□□□□□ -1.85
NIF3L1-204ENST00000409357 MT1EP04732 61 aa3.46□□□□□ -1.85
NIF3L1-204ENST00000409357 DSTQ03001 7570 aaKnown RBP3.45□□□□□ -1.86
NIF3L1-204ENST00000409357 KRTAP12-4P60329 112 aa3.45□□□□□ -1.86
NIF3L1-204ENST00000409357 MT1LQ93083 61 aa3.43□□□□□ -1.86
NIF3L1-204ENST00000409357 KRTAP19-3Q7Z4W3 81 aa3.42□□□□□ -1.86
NIF3L1-204ENST00000409357 LCE3EQ5T5B0 92 aa3.38□□□□□ -1.87
NIF3L1-204ENST00000409357 MT1GP13640 62 aa3.3□□□□□ -1.88
NIF3L1-204ENST00000409357 MT1MQ8N339 61 aa3.3□□□□□ -1.88
NIF3L1-204ENST00000409357 KRTAP4-3Q9BYR4 195 aa3.28□□□□□ -1.88
NIF3L1-204ENST00000409357 MT1AP04731 61 aa3.27□□□□□ -1.89
NIF3L1-204ENST00000409357 LCE1EQ5T753 118 aa3.26□□□□□ -1.89
NIF3L1-204ENST00000409357 HMCN1Q96RW7 5635 aa3.21□□□□□ -1.9
NIF3L1-204ENST00000409357 MT4P47944 62 aa3.17□□□□□ -1.9
NIF3L1-204ENST00000409357 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.15□□□□□ -1.9
NIF3L1-204ENST00000409357 KRTAP5-4Q6L8H1 288 aa3.13□□□□□ -1.91
NIF3L1-204ENST00000409357 KRTAP5-5Q701N2 237 aaPredicted RBP3.1□□□□□ -1.91
NIF3L1-204ENST00000409357 KRTAP5-11Q6L8G4 156 aa3.09□□□□□ -1.91
NIF3L1-204ENST00000409357 PRM1P04553 51 aa3.08□□□□□ -1.92
NIF3L1-204ENST00000409357 LCE3DQ9BYE3 92 aa3.08□□□□□ -1.92
NIF3L1-204ENST00000409357 AHNAK2Q8IVF2 5795 aa3.07□□□□□ -1.92
NIF3L1-204ENST00000409357 KRTAP5-10Q6L8G5 202 aa3.03□□□□□ -1.92
NIF3L1-204ENST00000409357 KRTAP20-2Q3LI61 65 aa2.95□□□□□ -1.94
NIF3L1-204ENST00000409357 KRTAP5-7Q6L8G8 165 aa2.95□□□□□ -1.94
NIF3L1-204ENST00000409357 SYNE1Q8NF91 8797 aaKnown RBP2.93□□□□□ -1.94
NIF3L1-204ENST00000409357 KRTAP6-2Q3LI66 62 aa2.87□□□□□ -1.95
NIF3L1-204ENST00000409357 KRTAP6-1Q3LI64 71 aa2.85□□□□□ -1.95
NIF3L1-204ENST00000409357 KRTAP5-2Q701N4 177 aa2.75□□□□□ -1.97
NIF3L1-204ENST00000409357 AHNAKQ09666 5890 aaKnown RBP2.66□□□□□ -1.98
NIF3L1-204ENST00000409357 OBSCNQ5VST9 7968 aa2.66□□□□□ -1.98
NIF3L1-204ENST00000409357 KRTAP5-8O75690 187 aa2.61□□□□□ -1.99
NIF3L1-204ENST00000409357 KRTAP5-1Q6L8H4 278 aa2.6□□□□□ -1.99
NIF3L1-204ENST00000409357 MUC5ACP98088 5654 aa2.6□□□□□ -1.99
NIF3L1-204ENST00000409357 MUC5BQ9HC84 5762 aaPredicted RBP2.56□□□□□ -2
NIF3L1-204ENST00000409357 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
NIF3L1-204ENST00000409357 LCE1BQ5T7P3 118 aa2.22□□□□□ -2.05
NIF3L1-204ENST00000409357 LCE1CQ5T751 118 aa2.21□□□□□ -2.06
NIF3L1-204ENST00000409357 KRTAP21-1Q3LI58 79 aa2.12□□□□□ -2.07
NIF3L1-204ENST00000409357 KRTAP21-2Q3LI59 83 aa1.88□□□□□ -2.11
NIF3L1-204ENST00000409357 MUC19Q7Z5P9 8384 aa1.83□□□□□ -2.12
NIF3L1-204ENST00000409357 PHGR1C9JFL3 82 aa1.75□□□□□ -2.13
NIF3L1-204ENST00000409357 MUC16Q8WXI7 14507 aa1.09□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 155 ms