RNA–Protein interactions for RNA: ENST00000409024.3

POLR1A-202, Transcript of RNA polymerase I subunit A, humanhuman

TSL 3

Gene POLR1A, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1A-202ENST00000409024 SPRR2AP35326 72 aa3.82□□□□□ -1.8
POLR1A-202ENST00000409024 LCE3AQ5TA76 89 aa3.81□□□□□ -1.8
POLR1A-202ENST00000409024 KRTAP8-1Q8IUC2 63 aa3.81□□□□□ -1.8
POLR1A-202ENST00000409024 SPRR2FQ96RM1 72 aa3.76□□□□□ -1.81
POLR1A-202ENST00000409024 SPRR2DP22532 72 aa3.7□□□□□ -1.82
POLR1A-202ENST00000409024 KRTAP12-3P60328 96 aa3.7□□□□□ -1.82
POLR1A-202ENST00000409024 LCE1AQ5T7P2 110 aa3.69□□□□□ -1.82
POLR1A-202ENST00000409024 KRTAP4-8A0A0G2JLE6 195 aa3.66□□□□□ -1.82
POLR1A-202ENST00000409024 KRTAP19-4Q3LI73 84 aa3.66□□□□□ -1.82
POLR1A-202ENST00000409024 KRTAP4-8Q9BYQ9 185 aa3.66□□□□□ -1.82
POLR1A-202ENST00000409024 KRTAP15-1Q3LI76 137 aa3.65□□□□□ -1.83
POLR1A-202ENST00000409024 KRTAP19-5Q3LI72 72 aa3.64□□□□□ -1.83
POLR1A-202ENST00000409024 LCE3BQ5TA77 95 aa3.64□□□□□ -1.83
POLR1A-202ENST00000409024 DSTQ03001 7570 aaKnown RBP3.61□□□□□ -1.83
POLR1A-202ENST00000409024 KRTAP19-7Q3SYF9 63 aa3.6□□□□□ -1.83
POLR1A-202ENST00000409024 MT1EP04732 61 aa3.55□□□□□ -1.84
POLR1A-202ENST00000409024 KRTAP4-9Q9BYQ8 210 aa3.52□□□□□ -1.85
POLR1A-202ENST00000409024 SPRR5A0A1B0GTR4 108 aa3.51□□□□□ -1.85
POLR1A-202ENST00000409024 MT1LQ93083 61 aa3.48□□□□□ -1.85
POLR1A-202ENST00000409024 AHNAK2Q8IVF2 5795 aa3.46□□□□□ -1.86
POLR1A-202ENST00000409024 LCE3CQ5T5A8 94 aa3.46□□□□□ -1.86
POLR1A-202ENST00000409024 HMCN1Q96RW7 5635 aa3.46□□□□□ -1.86
POLR1A-202ENST00000409024 MT1GP13640 62 aa3.44□□□□□ -1.86
POLR1A-202ENST00000409024 KRTAP19-3Q7Z4W3 81 aa3.43□□□□□ -1.86
POLR1A-202ENST00000409024 LUZP6Q538Z0 58 aa3.41□□□□□ -1.86
POLR1A-202ENST00000409024 KRTAP5-10Q6L8G5 202 aa3.38□□□□□ -1.87
POLR1A-202ENST00000409024 LCE1DQ5T752 114 aa3.37□□□□□ -1.87
POLR1A-202ENST00000409024 LCE5AQ5TCM9 118 aa3.37□□□□□ -1.87
POLR1A-202ENST00000409024 MT1MQ8N339 61 aa3.34□□□□□ -1.87
POLR1A-202ENST00000409024 KRTAP5-7Q6L8G8 165 aa3.32□□□□□ -1.88
POLR1A-202ENST00000409024 LOC100996750A0A140TA64 210 aa3.28□□□□□ -1.88
POLR1A-202ENST00000409024 KRTAP4-6Q9BYQ5 205 aa3.28□□□□□ -1.88
POLR1A-202ENST00000409024 MT4P47944 62 aa3.27□□□□□ -1.89
POLR1A-202ENST00000409024 KRTAP4-7Q9BYR0 210 aa3.27□□□□□ -1.89
POLR1A-202ENST00000409024 NDUFAF8A1L188 74 aa3.25□□□□□ -1.89
POLR1A-202ENST00000409024 LCE4AQ5TA78 99 aa3.25□□□□□ -1.89
POLR1A-202ENST00000409024 KRTAP9-6A8MVA2 160 aa3.2□□□□□ -1.9
POLR1A-202ENST00000409024 KRTAP5-3Q6L8H2 238 aa3.19□□□□□ -1.9
POLR1A-202ENST00000409024 KRTAP4-3Q9BYR4 195 aa3.18□□□□□ -1.9
POLR1A-202ENST00000409024 H3BS24 57 aa3.17□□□□□ -1.9
POLR1A-202ENST00000409024 KRTAP5-4Q6L8H1 288 aa3.07□□□□□ -1.92
POLR1A-202ENST00000409024 AHNAKQ09666 5890 aaKnown RBP3.06□□□□□ -1.92
POLR1A-202ENST00000409024 A0A0A0MQY5 61 aa3.06□□□□□ -1.92
POLR1A-202ENST00000409024 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
POLR1A-202ENST00000409024 MT1AP04731 61 aa2.99□□□□□ -1.93
POLR1A-202ENST00000409024 MUC5ACP98088 5654 aa2.96□□□□□ -1.94
POLR1A-202ENST00000409024 KRTAP20-2Q3LI61 65 aa2.94□□□□□ -1.94
POLR1A-202ENST00000409024 MUC5BQ9HC84 5762 aaPredicted RBP2.93□□□□□ -1.94
POLR1A-202ENST00000409024 KRTAP6-1Q3LI64 71 aa2.9□□□□□ -1.95
POLR1A-202ENST00000409024 KRTAP4-12Q9BQ66 201 aa2.89□□□□□ -1.95
POLR1A-202ENST00000409024 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
POLR1A-202ENST00000409024 KRTAP9-9Q9BYP9 154 aa2.84□□□□□ -1.95
POLR1A-202ENST00000409024 KRTAP9-4Q9BYQ2 154 aa2.84□□□□□ -1.95
POLR1A-202ENST00000409024 KRTAP4-11Q9BYQ6 195 aa2.82□□□□□ -1.96
POLR1A-202ENST00000409024 INE1O15225 51 aa2.8□□□□□ -1.96
POLR1A-202ENST00000409024 SYNE1Q8NF91 8797 aaKnown RBP2.79□□□□□ -1.96
POLR1A-202ENST00000409024 KRTAP5-8O75690 187 aa2.76□□□□□ -1.97
POLR1A-202ENST00000409024 MT3P25713 68 aa2.73□□□□□ -1.97
POLR1A-202ENST00000409024 KRTAP6-2Q3LI66 62 aa2.67□□□□□ -1.98
POLR1A-202ENST00000409024 KRTAP5-2Q701N4 177 aa2.64□□□□□ -1.99
POLR1A-202ENST00000409024 OBSCNQ5VST9 7968 aa2.64□□□□□ -1.99
POLR1A-202ENST00000409024 LCE3DQ9BYE3 92 aa2.61□□□□□ -1.99
POLR1A-202ENST00000409024 KRTAP4-2Q9BYR5 136 aa2.58□□□□□ -2
POLR1A-202ENST00000409024 LCE3EQ5T5B0 92 aa2.55□□□□□ -2
POLR1A-202ENST00000409024 KRTAP5-1Q6L8H4 278 aa2.43□□□□□ -2.02
POLR1A-202ENST00000409024 LCE1EQ5T753 118 aa2.41□□□□□ -2.02
POLR1A-202ENST00000409024 LCE1CQ5T751 118 aa2.22□□□□□ -2.05
POLR1A-202ENST00000409024 LCE1BQ5T7P3 118 aa2.22□□□□□ -2.05
POLR1A-202ENST00000409024 PRM1P04553 51 aa2.17□□□□□ -2.06
POLR1A-202ENST00000409024 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.09□□□□□ -2.07
POLR1A-202ENST00000409024 PHGR1C9JFL3 82 aa2□□□□□ -2.09
POLR1A-202ENST00000409024 KRTAP5-11Q6L8G4 156 aa1.97□□□□□ -2.09
POLR1A-202ENST00000409024 LCE1FQ5T754 118 aa1.94□□□□□ -2.1
POLR1A-202ENST00000409024 KRTAP21-2Q3LI59 83 aa1.92□□□□□ -2.1
POLR1A-202ENST00000409024 MUC19Q7Z5P9 8384 aa1.68□□□□□ -2.14
POLR1A-202ENST00000409024 KRTAP4-4Q9BYR3 166 aa1.61□□□□□ -2.15
POLR1A-202ENST00000409024 KRTAP21-1Q3LI58 79 aa1.54□□□□□ -2.16
POLR1A-202ENST00000409024 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 110.7 ms