RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 KRTAP12-3P60328 96 aa10.59□□□□□ -0.71
USP42-202ENST00000404008 SPRR2DP22532 72 aa10.58□□□□□ -0.72
USP42-202ENST00000404008 LCE5AQ5TCM9 118 aa10.55□□□□□ -0.72
USP42-202ENST00000404008 MT1LQ93083 61 aa10.49□□□□□ -0.73
USP42-202ENST00000404008 MT1GP13640 62 aa10.43□□□□□ -0.74
USP42-202ENST00000404008 KRTAP2-3P0C7H8 128 aa10.41□□□□□ -0.74
USP42-202ENST00000404008 KRTAP2-4Q9BYR9 128 aa10.41□□□□□ -0.74
USP42-202ENST00000404008 PP632Q6XCG6 107 aa10.39□□□□□ -0.75
USP42-202ENST00000404008 MT1MQ8N339 61 aa10.28□□□□□ -0.76
USP42-202ENST00000404008 LCE3BQ5TA77 95 aa10.25□□□□□ -0.77
USP42-202ENST00000404008 PMAIP1Q13794 54 aa10.22□□□□□ -0.77
USP42-202ENST00000404008 KRTAP15-1Q3LI76 137 aa10.13□□□□□ -0.79
USP42-202ENST00000404008 KRTAP2-2Q9BYT5 123 aa10.12□□□□□ -0.79
USP42-202ENST00000404008 KRTAP2-1Q9BYU5 128 aa10.12□□□□□ -0.79
USP42-202ENST00000404008 PRO0628Q9UI54 55 aa10.1□□□□□ -0.79
USP42-202ENST00000404008 DSTQ03001 7570 aaKnown RBP10.06□□□□□ -0.8
USP42-202ENST00000404008 KRTAP19-4Q3LI73 84 aa10.01□□□□□ -0.81
USP42-202ENST00000404008 KRTAP4-7Q9BYR0 210 aa10.01□□□□□ -0.81
USP42-202ENST00000404008 KRTAP4-3Q9BYR4 195 aa10.01□□□□□ -0.81
USP42-202ENST00000404008 LCE3CQ5T5A8 94 aa9.82□□□□□ -0.84
USP42-202ENST00000404008 PRAC1Q96KF2 57 aa9.68□□□□□ -0.86
USP42-202ENST00000404008 GPR98Q8WXG9 6306 aa9.57□□□□□ -0.88
USP42-202ENST00000404008 KTN1-AS1Q86SY8 53 aa9.5□□□□□ -0.89
USP42-202ENST00000404008 LOC100996750A0A140TA64 210 aa9.46□□□□□ -0.9
USP42-202ENST00000404008 LCE4AQ5TA78 99 aa9.4□□□□□ -0.9
USP42-202ENST00000404008 KRTAP5-4Q6L8H1 288 aa9.38□□□□□ -0.91
USP42-202ENST00000404008 KRTAP5-5Q701N2 237 aaPredicted RBP9.37□□□□□ -0.91
USP42-202ENST00000404008 KRTAP4-9Q9BYQ8 210 aa9.34□□□□□ -0.91
USP42-202ENST00000404008 KRTAP9-6A8MVA2 160 aa9.27□□□□□ -0.93
USP42-202ENST00000404008 LCE1DQ5T752 114 aa9.22□□□□□ -0.93
USP42-202ENST00000404008 MT4P47944 62 aa9.2□□□□□ -0.94
USP42-202ENST00000404008 HMCN1Q96RW7 5635 aa9.08□□□□□ -0.96
USP42-202ENST00000404008 KRTAP4-6Q9BYQ5 205 aa9.03□□□□□ -0.96
USP42-202ENST00000404008 SVIPQ8NHG7 77 aa8.98□□□□□ -0.97
USP42-202ENST00000404008 MT1AP04731 61 aa8.93□□□□□ -0.98
USP42-202ENST00000404008 KRTAP12-4P60329 112 aa8.91□□□□□ -0.98
USP42-202ENST00000404008 SYNE1Q8NF91 8797 aaKnown RBP8.85□□□□□ -0.99
USP42-202ENST00000404008 SPRR5A0A1B0GTR4 108 aa8.85□□□□□ -0.99
USP42-202ENST00000404008 KRTAP6-1Q3LI64 71 aa8.85□□□□□ -0.99
USP42-202ENST00000404008 KRTAP20-2Q3LI61 65 aa8.8□□□□□ -1
USP42-202ENST00000404008 AHNAK2Q8IVF2 5795 aa8.63□□□□□ -1.03
USP42-202ENST00000404008 KRTAP9-4Q9BYQ2 154 aa8.56□□□□□ -1.04
USP42-202ENST00000404008 KRTAP5-3Q6L8H2 238 aa8.52□□□□□ -1.05
USP42-202ENST00000404008 KRTAP5-10Q6L8G5 202 aa8.5□□□□□ -1.05
USP42-202ENST00000404008 KRTAP5-2Q701N4 177 aa8.35□□□□□ -1.07
USP42-202ENST00000404008 KRTAP6-2Q3LI66 62 aa8.31□□□□□ -1.08
USP42-202ENST00000404008 KRTAP5-7Q6L8G8 165 aa8.25□□□□□ -1.09
USP42-202ENST00000404008 MT3P25713 68 aa8.12□□□□□ -1.11
USP42-202ENST00000404008 LUZP6Q538Z0 58 aa8.02□□□□□ -1.13
USP42-202ENST00000404008 KRTAP4-11Q9BYQ6 195 aa7.84□□□□□ -1.15
USP42-202ENST00000404008 OBSCNQ5VST9 7968 aa7.64□□□□□ -1.19
USP42-202ENST00000404008 KRTAP5-8O75690 187 aa7.59□□□□□ -1.2
USP42-202ENST00000404008 KRTAP5-1Q6L8H4 278 aa7.35□□□□□ -1.23
USP42-202ENST00000404008 LCE1EQ5T753 118 aa7.3□□□□□ -1.24
USP42-202ENST00000404008 AHNAKQ09666 5890 aaKnown RBP7.28□□□□□ -1.24
USP42-202ENST00000404008 MUC5ACP98088 5654 aa7.23□□□□□ -1.25
USP42-202ENST00000404008 MUC5BQ9HC84 5762 aaPredicted RBP7.23□□□□□ -1.25
USP42-202ENST00000404008 LCE3DQ9BYE3 92 aa7.21□□□□□ -1.25
USP42-202ENST00000404008 NDUFAF8A1L188 74 aa7.17□□□□□ -1.26
USP42-202ENST00000404008 KRTAP9-9Q9BYP9 154 aa7.03□□□□□ -1.28
USP42-202ENST00000404008 LCE3EQ5T5B0 92 aa6.91□□□□□ -1.3
USP42-202ENST00000404008 KRTAP4-2Q9BYR5 136 aa6.83□□□□□ -1.32
USP42-202ENST00000404008 LCE1BQ5T7P3 118 aa6.8□□□□□ -1.32
USP42-202ENST00000404008 LCE1CQ5T751 118 aa6.78□□□□□ -1.32
USP42-202ENST00000404008 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.27□□□□□ -1.41
USP42-202ENST00000404008 KRTAP5-11Q6L8G4 156 aa6.07□□□□□ -1.44
USP42-202ENST00000404008 A0A0A0MQY5 61 aa6.01□□□□□ -1.45
USP42-202ENST00000404008 KRTAP4-12Q9BQ66 201 aa5.98□□□□□ -1.45
USP42-202ENST00000404008 INE1O15225 51 aa5.88□□□□□ -1.47
USP42-202ENST00000404008 KRTAP21-2Q3LI59 83 aa5.83□□□□□ -1.48
USP42-202ENST00000404008 LCE1FQ5T754 118 aa5.73□□□□□ -1.49
USP42-202ENST00000404008 PRM1P04553 51 aa5.6□□□□□ -1.51
USP42-202ENST00000404008 H3BS24 57 aa5.32□□□□□ -1.56
USP42-202ENST00000404008 PHGR1C9JFL3 82 aa5.23□□□□□ -1.57
USP42-202ENST00000404008 KRTAP4-4Q9BYR3 166 aa5.21□□□□□ -1.58
USP42-202ENST00000404008 MUC19Q7Z5P9 8384 aa4.64□□□□□ -1.67
USP42-202ENST00000404008 KRTAP21-1Q3LI58 79 aa3.78□□□□□ -1.8
USP42-202ENST00000404008 MUC16Q8WXI7 14507 aa3.34□□□□□ -1.87
Retrieved 78 of 20,778 RNA–protein pairs in 26 ms