RNA–Protein interactions for RNA: ENST00000403162.7

CCDC47-202, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC47, Length 2,195 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-202ENST00000403162 KRTAP19-4Q3LI73 84 aa6.94□□□□□ -1.3
CCDC47-202ENST00000403162 KRTAP2-3P0C7H8 128 aa6.89□□□□□ -1.31
CCDC47-202ENST00000403162 KRTAP2-4Q9BYR9 128 aa6.89□□□□□ -1.31
CCDC47-202ENST00000403162 KRTAP2-1Q9BYU5 128 aa6.89□□□□□ -1.31
CCDC47-202ENST00000403162 SYNE2Q8WXH0 6885 aaKnown RBP6.88□□□□□ -1.31
CCDC47-202ENST00000403162 KRTAP4-7Q9BYR0 210 aa6.83□□□□□ -1.32
CCDC47-202ENST00000403162 MT1LQ93083 61 aa6.81□□□□□ -1.32
CCDC47-202ENST00000403162 MT1EP04732 61 aa6.78□□□□□ -1.32
CCDC47-202ENST00000403162 SPRR2FQ96RM1 72 aa6.77□□□□□ -1.33
CCDC47-202ENST00000403162 KRTAP5-9P26371 169 aa6.72□□□□□ -1.33
CCDC47-202ENST00000403162 KRTAP6-3Q3LI67 103 aa6.71□□□□□ -1.33
CCDC47-202ENST00000403162 MUC12Q9UKN1 5478 aa6.66□□□□□ -1.34
CCDC47-202ENST00000403162 KRTAP9-7A8MTY7 169 aa6.64□□□□□ -1.35
CCDC47-202ENST00000403162 MDN1Q9NU22 5596 aa6.52□□□□□ -1.37
CCDC47-202ENST00000403162 KRTAP19-3Q7Z4W3 81 aa6.5□□□□□ -1.37
CCDC47-202ENST00000403162 SPRR2EP22531 72 aa6.48□□□□□ -1.37
CCDC47-202ENST00000403162 SPRR2BP35325 72 aa6.48□□□□□ -1.37
CCDC47-202ENST00000403162 SPRR2AP35326 72 aa6.48□□□□□ -1.37
CCDC47-202ENST00000403162 LCE1AQ5T7P2 110 aa6.48□□□□□ -1.37
CCDC47-202ENST00000403162 MT1GP13640 62 aa6.41□□□□□ -1.38
CCDC47-202ENST00000403162 LCE5AQ5TCM9 118 aa6.41□□□□□ -1.38
CCDC47-202ENST00000403162 LOC100996750A0A140TA64 210 aa6.36□□□□□ -1.39
CCDC47-202ENST00000403162 KRTAP4-3Q9BYR4 195 aa6.35□□□□□ -1.39
CCDC47-202ENST00000403162 MT1MQ8N339 61 aa6.34□□□□□ -1.39
CCDC47-202ENST00000403162 NEBP20929 6669 aa6.31□□□□□ -1.4
CCDC47-202ENST00000403162 SPRR2DP22532 72 aa6.25□□□□□ -1.41
CCDC47-202ENST00000403162 DSTQ03001 7570 aaKnown RBP6.08□□□□□ -1.44
CCDC47-202ENST00000403162 KRTAP12-4P60329 112 aa6.07□□□□□ -1.44
CCDC47-202ENST00000403162 LCE3BQ5TA77 95 aa6.01□□□□□ -1.45
CCDC47-202ENST00000403162 KRTAP20-1Q3LI63 56 aa5.89□□□□□ -1.47
CCDC47-202ENST00000403162 MT1AP04731 61 aa5.84□□□□□ -1.47
CCDC47-202ENST00000403162 KRTAP2-2Q9BYT5 123 aa5.78□□□□□ -1.48
CCDC47-202ENST00000403162 KRTAP4-9Q9BYQ8 210 aa5.76□□□□□ -1.49
CCDC47-202ENST00000403162 KRTAP6-1Q3LI64 71 aa5.75□□□□□ -1.49
CCDC47-202ENST00000403162 KRTAP5-5Q701N2 237 aaPredicted RBP5.72□□□□□ -1.49
CCDC47-202ENST00000403162 LCE3DQ9BYE3 92 aa5.63□□□□□ -1.51
CCDC47-202ENST00000403162 LCE3EQ5T5B0 92 aa5.59□□□□□ -1.52
CCDC47-202ENST00000403162 SYNE1Q8NF91 8797 aaKnown RBP5.58□□□□□ -1.52
CCDC47-202ENST00000403162 KRTAP5-4Q6L8H1 288 aa5.56□□□□□ -1.52
CCDC47-202ENST00000403162 LCE4AQ5TA78 99 aa5.51□□□□□ -1.53
CCDC47-202ENST00000403162 MT4P47944 62 aa5.45□□□□□ -1.54
CCDC47-202ENST00000403162 PRM1P04553 51 aa5.39□□□□□ -1.55
CCDC47-202ENST00000403162 LCE1DQ5T752 114 aa5.36□□□□□ -1.55
CCDC47-202ENST00000403162 KRTAP9-4Q9BYQ2 154 aa5.36□□□□□ -1.55
CCDC47-202ENST00000403162 KRTAP4-6Q9BYQ5 205 aa5.36□□□□□ -1.55
CCDC47-202ENST00000403162 HMCN1Q96RW7 5635 aa5.28□□□□□ -1.56
CCDC47-202ENST00000403162 KRTAP20-2Q3LI61 65 aa5.23□□□□□ -1.57
CCDC47-202ENST00000403162 KRTAP6-2Q3LI66 62 aa5.21□□□□□ -1.58
CCDC47-202ENST00000403162 MT3P25713 68 aa5.12□□□□□ -1.59
CCDC47-202ENST00000403162 KRTAP5-3Q6L8H2 238 aa5.03□□□□□ -1.6
CCDC47-202ENST00000403162 KRTAP5-2Q701N4 177 aa5.01□□□□□ -1.61
CCDC47-202ENST00000403162 AHNAK2Q8IVF2 5795 aa4.8□□□□□ -1.64
CCDC47-202ENST00000403162 OBSCNQ5VST9 7968 aa4.73□□□□□ -1.65
CCDC47-202ENST00000403162 KRTAP4-11Q9BYQ6 195 aa4.59□□□□□ -1.67
CCDC47-202ENST00000403162 KRTAP5-10Q6L8G5 202 aa4.55□□□□□ -1.68
CCDC47-202ENST00000403162 GPR98Q8WXG9 6306 aa4.51□□□□□ -1.69
CCDC47-202ENST00000403162 LCE1EQ5T753 118 aa4.43□□□□□ -1.7
CCDC47-202ENST00000403162 KRTAP5-8O75690 187 aa4.41□□□□□ -1.7
CCDC47-202ENST00000403162 KRTAP5-1Q6L8H4 278 aa4.37□□□□□ -1.71
CCDC47-202ENST00000403162 MUC5ACP98088 5654 aa4.3□□□□□ -1.72
CCDC47-202ENST00000403162 KRTAP5-7Q6L8G8 165 aa4.25□□□□□ -1.73
CCDC47-202ENST00000403162 LCE1BQ5T7P3 118 aa4.21□□□□□ -1.74
CCDC47-202ENST00000403162 KRTAP4-2Q9BYR5 136 aa4.14□□□□□ -1.75
CCDC47-202ENST00000403162 LCE1CQ5T751 118 aa4.12□□□□□ -1.75
CCDC47-202ENST00000403162 KRTAP9-9Q9BYP9 154 aa4.04□□□□□ -1.76
CCDC47-202ENST00000403162 MUC5BQ9HC84 5762 aaPredicted RBP3.84□□□□□ -1.8
CCDC47-202ENST00000403162 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.82□□□□□ -1.8
CCDC47-202ENST00000403162 KRTAP4-12Q9BQ66 201 aa3.74□□□□□ -1.81
CCDC47-202ENST00000403162 KRTAP21-2Q3LI59 83 aa3.72□□□□□ -1.81
CCDC47-202ENST00000403162 AHNAKQ09666 5890 aaKnown RBP3.71□□□□□ -1.82
CCDC47-202ENST00000403162 KRTAP5-11Q6L8G4 156 aa3.65□□□□□ -1.82
CCDC47-202ENST00000403162 KRTAP21-1Q3LI58 79 aa3.45□□□□□ -1.86
CCDC47-202ENST00000403162 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
CCDC47-202ENST00000403162 KRTAP4-4Q9BYR3 166 aa3.33□□□□□ -1.88
CCDC47-202ENST00000403162 PHGR1C9JFL3 82 aa3.15□□□□□ -1.91
CCDC47-202ENST00000403162 MUC19Q7Z5P9 8384 aa3.1□□□□□ -1.91
CCDC47-202ENST00000403162 MUC16Q8WXI7 14507 aa2.01□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 10.5 ms