RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 KRTAP19-6Q3LI70 58 aa5.75□□□□□ -1.49
PTPRA-205ENST00000399903 MACF1Q9UPN3 7388 aaKnown RBP5.71□□□□□ -1.5
PTPRA-205ENST00000399903 MT1EP04732 61 aa5.7□□□□□ -1.5
PTPRA-205ENST00000399903 SYNE2Q8WXH0 6885 aaKnown RBP5.66□□□□□ -1.5
PTPRA-205ENST00000399903 LOC100996750A0A140TA64 210 aa5.66□□□□□ -1.5
PTPRA-205ENST00000399903 MT1LQ93083 61 aa5.66□□□□□ -1.5
PTPRA-205ENST00000399903 KRTAP12-4P60329 112 aa5.64□□□□□ -1.51
PTPRA-205ENST00000399903 KRTAP4-3Q9BYR4 195 aa5.63□□□□□ -1.51
PTPRA-205ENST00000399903 LCE2DQ5TA82 110 aaPredicted RBP5.56□□□□□ -1.52
PTPRA-205ENST00000399903 MT1GP13640 62 aa5.54□□□□□ -1.52
PTPRA-205ENST00000399903 MDN1Q9NU22 5596 aa5.48□□□□□ -1.53
PTPRA-205ENST00000399903 SPRR2FQ96RM1 72 aa5.46□□□□□ -1.53
PTPRA-205ENST00000399903 SYNE1Q8NF91 8797 aaKnown RBP5.44□□□□□ -1.54
PTPRA-205ENST00000399903 KRTAP19-3Q7Z4W3 81 aa5.36□□□□□ -1.55
PTPRA-205ENST00000399903 KRTAP9-2Q9BYQ4 174 aa5.36□□□□□ -1.55
PTPRA-205ENST00000399903 MT1MQ8N339 61 aa5.36□□□□□ -1.55
PTPRA-205ENST00000399903 KRTAP4-9Q9BYQ8 210 aa5.35□□□□□ -1.55
PTPRA-205ENST00000399903 LCE3BQ5TA77 95 aa5.33□□□□□ -1.56
PTPRA-205ENST00000399903 OBSCNQ5VST9 7968 aa5.28□□□□□ -1.56
PTPRA-205ENST00000399903 KRTAP19-4Q3LI73 84 aa5.25□□□□□ -1.57
PTPRA-205ENST00000399903 LCE5AQ5TCM9 118 aa5.18□□□□□ -1.58
PTPRA-205ENST00000399903 KRTAP9-7A8MTY7 169 aa5.09□□□□□ -1.59
PTPRA-205ENST00000399903 PRM1P04553 51 aa5.07□□□□□ -1.6
PTPRA-205ENST00000399903 LCE1AQ5T7P2 110 aa5.01□□□□□ -1.61
PTPRA-205ENST00000399903 SPRR2EP22531 72 aa5□□□□□ -1.61
PTPRA-205ENST00000399903 SPRR2BP35325 72 aa5□□□□□ -1.61
PTPRA-205ENST00000399903 SPRR2AP35326 72 aa5□□□□□ -1.61
PTPRA-205ENST00000399903 LCE3DQ9BYE3 92 aa4.99□□□□□ -1.61
PTPRA-205ENST00000399903 LCE3EQ5T5B0 92 aa4.94□□□□□ -1.62
PTPRA-205ENST00000399903 KRTAP5-9P26371 169 aa4.89□□□□□ -1.63
PTPRA-205ENST00000399903 KRTAP6-1Q3LI64 71 aa4.89□□□□□ -1.63
PTPRA-205ENST00000399903 KRTAP5-5Q701N2 237 aaPredicted RBP4.84□□□□□ -1.64
PTPRA-205ENST00000399903 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.78□□□□□ -1.64
PTPRA-205ENST00000399903 MT1AP04731 61 aa4.78□□□□□ -1.64
PTPRA-205ENST00000399903 SPRR2DP22532 72 aa4.76□□□□□ -1.65
PTPRA-205ENST00000399903 LCE1EQ5T753 118 aa4.76□□□□□ -1.65
PTPRA-205ENST00000399903 KRTAP2-2Q9BYT5 123 aa4.75□□□□□ -1.65
PTPRA-205ENST00000399903 KRTAP6-2Q3LI66 62 aa4.69□□□□□ -1.66
PTPRA-205ENST00000399903 KRTAP9-6A0A140TA67 174 aa4.67□□□□□ -1.66
PTPRA-205ENST00000399903 KRTAP6-3Q3LI67 103 aa4.63□□□□□ -1.67
PTPRA-205ENST00000399903 NEBP20929 6669 aa4.54□□□□□ -1.68
PTPRA-205ENST00000399903 LCE1DQ5T752 114 aa4.5□□□□□ -1.69
PTPRA-205ENST00000399903 KRTAP9-4Q9BYQ2 154 aa4.45□□□□□ -1.7
PTPRA-205ENST00000399903 LCE1FQ5T754 118 aa4.38□□□□□ -1.71
PTPRA-205ENST00000399903 MT4P47944 62 aa4.36□□□□□ -1.71
PTPRA-205ENST00000399903 KRTAP4-6Q9BYQ5 205 aa4.31□□□□□ -1.72
PTPRA-205ENST00000399903 MT3P25713 68 aa4.25□□□□□ -1.73
PTPRA-205ENST00000399903 HMCN1Q96RW7 5635 aa4.19□□□□□ -1.74
PTPRA-205ENST00000399903 MUC19Q7Z5P9 8384 aa4.18□□□□□ -1.74
PTPRA-205ENST00000399903 KRTAP5-4Q6L8H1 288 aa4.15□□□□□ -1.74
PTPRA-205ENST00000399903 KRTAP20-2Q3LI61 65 aa4.03□□□□□ -1.76
PTPRA-205ENST00000399903 LCE4AQ5TA78 99 aa3.94□□□□□ -1.78
PTPRA-205ENST00000399903 KRTAP4-11Q9BYQ6 195 aa3.87□□□□□ -1.79
PTPRA-205ENST00000399903 KRTAP20-1Q3LI63 56 aa3.85□□□□□ -1.79
PTPRA-205ENST00000399903 KRTAP5-2Q701N4 177 aa3.83□□□□□ -1.8
PTPRA-205ENST00000399903 KRTAP5-3Q6L8H2 238 aa3.78□□□□□ -1.8
PTPRA-205ENST00000399903 MUC5ACP98088 5654 aa3.75□□□□□ -1.81
PTPRA-205ENST00000399903 LCE1BQ5T7P3 118 aa3.7□□□□□ -1.82
PTPRA-205ENST00000399903 KRTAP5-10Q6L8G5 202 aa3.45□□□□□ -1.86
PTPRA-205ENST00000399903 AHNAK2Q8IVF2 5795 aa3.43□□□□□ -1.86
PTPRA-205ENST00000399903 KRTAP9-9Q9BYP9 154 aa3.41□□□□□ -1.86
PTPRA-205ENST00000399903 KRTAP5-1Q6L8H4 278 aa3.38□□□□□ -1.87
PTPRA-205ENST00000399903 KRTAP4-2Q9BYR5 136 aa3.37□□□□□ -1.87
PTPRA-205ENST00000399903 MUC5BQ9HC84 5762 aaPredicted RBP3.27□□□□□ -1.89
PTPRA-205ENST00000399903 LCE1CQ5T751 118 aa3.24□□□□□ -1.89
PTPRA-205ENST00000399903 KRTAP5-8O75690 187 aa3.24□□□□□ -1.89
PTPRA-205ENST00000399903 KRTAP4-4Q9BYR3 166 aa3.18□□□□□ -1.9
PTPRA-205ENST00000399903 GPR98Q8WXG9 6306 aa3.09□□□□□ -1.91
PTPRA-205ENST00000399903 KRTAP21-2Q3LI59 83 aa3.09□□□□□ -1.91
PTPRA-205ENST00000399903 KRTAP4-12Q9BQ66 201 aa3.04□□□□□ -1.92
PTPRA-205ENST00000399903 KRTAP21-1Q3LI58 79 aa2.98□□□□□ -1.93
PTPRA-205ENST00000399903 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.96□□□□□ -1.94
PTPRA-205ENST00000399903 KRTAP5-7Q6L8G8 165 aa2.95□□□□□ -1.94
PTPRA-205ENST00000399903 KRTAP5-11Q6L8G4 156 aa2.8□□□□□ -1.96
PTPRA-205ENST00000399903 AHNAKQ09666 5890 aaKnown RBP2.54□□□□□ -2
PTPRA-205ENST00000399903 PHGR1C9JFL3 82 aa2.46□□□□□ -2.02
PTPRA-205ENST00000399903 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 70.4 ms