RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 KRTAP12-3P60328 96 aa2.46□□□□□ -2.02
TM9SF4-202ENST00000398022 LCE1EQ5T753 118 aa2.45□□□□□ -2.02
TM9SF4-202ENST00000398022 KRTAP5-9P26371 169 aa2.43□□□□□ -2.02
TM9SF4-202ENST00000398022 KMT2DO14686 5537 aa2.43□□□□□ -2.02
TM9SF4-202ENST00000398022 MT3P25713 68 aa2.42□□□□□ -2.02
TM9SF4-202ENST00000398022 KRTAP12-4P60329 112 aa2.42□□□□□ -2.02
TM9SF4-202ENST00000398022 MT1XP80297 61 aa2.42□□□□□ -2.02
TM9SF4-202ENST00000398022 KRTAP10-5P60370 271 aa2.41□□□□□ -2.02
TM9SF4-202ENST00000398022 MT1BP07438 61 aa2.41□□□□□ -2.02
TM9SF4-202ENST00000398022 KRTAP10-7P60409 375 aaPredicted RBP2.35□□□□□ -2.03
TM9SF4-202ENST00000398022 LCE1DQ5T752 114 aa2.35□□□□□ -2.03
TM9SF4-202ENST00000398022 LCE3CQ5T5A8 94 aa2.33□□□□□ -2.04
TM9SF4-202ENST00000398022 SYNE1Q8NF91 8797 aaKnown RBP2.32□□□□□ -2.04
TM9SF4-202ENST00000398022 KRTAP20-1Q3LI63 56 aa2.31□□□□□ -2.04
TM9SF4-202ENST00000398022 KRTAP19-5Q3LI72 72 aa2.29□□□□□ -2.04
TM9SF4-202ENST00000398022 KRTAP9-9Q9BYP9 154 aa2.29□□□□□ -2.04
TM9SF4-202ENST00000398022 OBSCNQ5VST9 7968 aa2.27□□□□□ -2.05
TM9SF4-202ENST00000398022 SPRR2FQ96RM1 72 aa2.25□□□□□ -2.05
TM9SF4-202ENST00000398022 KRTAP2-3P0C7H8 128 aa2.24□□□□□ -2.05
TM9SF4-202ENST00000398022 KRTAP2-4Q9BYR9 128 aa2.24□□□□□ -2.05
TM9SF4-202ENST00000398022 KRTAP2-1Q9BYU5 128 aa2.24□□□□□ -2.05
TM9SF4-202ENST00000398022 SPRR2EP22531 72 aa2.2□□□□□ -2.06
TM9SF4-202ENST00000398022 SPRR2BP35325 72 aa2.2□□□□□ -2.06
TM9SF4-202ENST00000398022 SPRR2AP35326 72 aa2.2□□□□□ -2.06
TM9SF4-202ENST00000398022 KRTAP4-8A0A0G2JLE6 195 aa2.17□□□□□ -2.06
TM9SF4-202ENST00000398022 KRTAP4-8Q9BYQ9 185 aa2.17□□□□□ -2.06
TM9SF4-202ENST00000398022 GPR98Q8WXG9 6306 aa2.16□□□□□ -2.06
TM9SF4-202ENST00000398022 LCE3EQ5T5B0 92 aa2.16□□□□□ -2.06
TM9SF4-202ENST00000398022 KRTAP9-6A8MVA2 160 aa2.14□□□□□ -2.07
TM9SF4-202ENST00000398022 KRTAP19-7Q3SYF9 63 aa2.14□□□□□ -2.07
TM9SF4-202ENST00000398022 SPRR2DP22532 72 aa2.13□□□□□ -2.07
TM9SF4-202ENST00000398022 LCE4AQ5TA78 99 aa2.12□□□□□ -2.07
TM9SF4-202ENST00000398022 MT1LQ93083 61 aa2.11□□□□□ -2.07
TM9SF4-202ENST00000398022 MT1EP04732 61 aa2.1□□□□□ -2.07
TM9SF4-202ENST00000398022 KRTAP4-7Q9BYR0 210 aa2.09□□□□□ -2.07
TM9SF4-202ENST00000398022 DSTQ03001 7570 aaKnown RBP2.08□□□□□ -2.08
TM9SF4-202ENST00000398022 LCE3DQ9BYE3 92 aa2.06□□□□□ -2.08
TM9SF4-202ENST00000398022 MUC19Q7Z5P9 8384 aa2.05□□□□□ -2.08
TM9SF4-202ENST00000398022 HMCN1Q96RW7 5635 aa2.05□□□□□ -2.08
TM9SF4-202ENST00000398022 AHNAK2Q8IVF2 5795 aa2.02□□□□□ -2.09
TM9SF4-202ENST00000398022 LCE3BQ5TA77 95 aa2.02□□□□□ -2.09
TM9SF4-202ENST00000398022 KRTAP5-10Q6L8G5 202 aa2.01□□□□□ -2.09
TM9SF4-202ENST00000398022 PRM1P04553 51 aa1.99□□□□□ -2.09
TM9SF4-202ENST00000398022 MT1GP13640 62 aa1.99□□□□□ -2.09
TM9SF4-202ENST00000398022 KRTAP19-3Q7Z4W3 81 aa1.97□□□□□ -2.09
TM9SF4-202ENST00000398022 MT1MQ8N339 61 aa1.96□□□□□ -2.1
TM9SF4-202ENST00000398022 LOC100996750A0A140TA64 210 aa1.95□□□□□ -2.1
TM9SF4-202ENST00000398022 KRTAP5-4Q6L8H1 288 aa1.95□□□□□ -2.1
TM9SF4-202ENST00000398022 KRTAP4-3Q9BYR4 195 aa1.94□□□□□ -2.1
TM9SF4-202ENST00000398022 KRTAP4-9Q9BYQ8 210 aa1.94□□□□□ -2.1
TM9SF4-202ENST00000398022 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
TM9SF4-202ENST00000398022 MT4P47944 62 aa1.92□□□□□ -2.1
TM9SF4-202ENST00000398022 KRTAP4-6Q9BYQ5 205 aa1.84□□□□□ -2.11
TM9SF4-202ENST00000398022 MT1AP04731 61 aa1.83□□□□□ -2.12
TM9SF4-202ENST00000398022 KRTAP5-5Q701N2 237 aaPredicted RBP1.83□□□□□ -2.12
TM9SF4-202ENST00000398022 KRTAP5-3Q6L8H2 238 aa1.81□□□□□ -2.12
TM9SF4-202ENST00000398022 KRTAP4-12Q9BQ66 201 aa1.8□□□□□ -2.12
TM9SF4-202ENST00000398022 KRTAP6-1Q3LI64 71 aa1.77□□□□□ -2.13
TM9SF4-202ENST00000398022 KRTAP20-2Q3LI61 65 aa1.74□□□□□ -2.13
TM9SF4-202ENST00000398022 MUC5ACP98088 5654 aa1.73□□□□□ -2.13
TM9SF4-202ENST00000398022 KRTAP5-2Q701N4 177 aa1.7□□□□□ -2.14
TM9SF4-202ENST00000398022 MUC5BQ9HC84 5762 aaPredicted RBP1.66□□□□□ -2.14
TM9SF4-202ENST00000398022 KRTAP6-2Q3LI66 62 aa1.66□□□□□ -2.14
TM9SF4-202ENST00000398022 KRTAP5-8O75690 187 aa1.66□□□□□ -2.14
TM9SF4-202ENST00000398022 AHNAKQ09666 5890 aaKnown RBP1.65□□□□□ -2.15
TM9SF4-202ENST00000398022 LCE1CQ5T751 118 aa1.6□□□□□ -2.15
TM9SF4-202ENST00000398022 LCE1BQ5T7P3 118 aa1.6□□□□□ -2.15
TM9SF4-202ENST00000398022 KRTAP4-11Q9BYQ6 195 aa1.6□□□□□ -2.15
TM9SF4-202ENST00000398022 KRTAP5-1Q6L8H4 278 aa1.55□□□□□ -2.16
TM9SF4-202ENST00000398022 KRTAP4-2Q9BYR5 136 aa1.49□□□□□ -2.17
TM9SF4-202ENST00000398022 KRTAP21-1Q3LI58 79 aa1.38□□□□□ -2.19
TM9SF4-202ENST00000398022 KRTAP5-11Q6L8G4 156 aa1.26□□□□□ -2.21
TM9SF4-202ENST00000398022 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.19□□□□□ -2.22
TM9SF4-202ENST00000398022 KRTAP21-2Q3LI59 83 aa1.13□□□□□ -2.23
TM9SF4-202ENST00000398022 KRTAP4-4Q9BYR3 166 aa1.11□□□□□ -2.23
TM9SF4-202ENST00000398022 PHGR1C9JFL3 82 aa1.1□□□□□ -2.23
TM9SF4-202ENST00000398022 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 98.8 ms