RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 BIRC6Q9NR09 4857 aa3.47□□□□□ -1.85
TTC28-201ENST00000397906 KRTAP20-1Q3LI63 56 aa3.44□□□□□ -1.86
TTC28-201ENST00000397906 KMT2CQ8NEZ4 4911 aaKnown RBP3.41□□□□□ -1.86
TTC28-201ENST00000397906 PRM1P04553 51 aa3.41□□□□□ -1.86
TTC28-201ENST00000397906 KRTAP9-7A8MTY7 169 aa3.4□□□□□ -1.87
TTC28-201ENST00000397906 LCE2AQ5TA79 106 aaPredicted RBP3.38□□□□□ -1.87
TTC28-201ENST00000397906 FLGP20930 4061 aaPredicted RBP3.38□□□□□ -1.87
TTC28-201ENST00000397906 HERC1Q15751 4861 aa3.36□□□□□ -1.87
TTC28-201ENST00000397906 LCE5AQ5TCM9 118 aa3.34□□□□□ -1.87
TTC28-201ENST00000397906 KRTAP4-9Q9BYQ8 210 aa3.33□□□□□ -1.88
TTC28-201ENST00000397906 MUC17Q685J3 4493 aa3.31□□□□□ -1.88
TTC28-201ENST00000397906 FSIP2Q5CZC0 6907 aa3.29□□□□□ -1.88
TTC28-201ENST00000397906 SYNE2Q8WXH0 6885 aaKnown RBP3.27□□□□□ -1.89
TTC28-201ENST00000397906 KRTAP19-7Q3SYF9 63 aa3.27□□□□□ -1.89
TTC28-201ENST00000397906 MT1AP04731 61 aa3.23□□□□□ -1.89
TTC28-201ENST00000397906 KRTAP2-3P0C7H8 128 aa3.22□□□□□ -1.89
TTC28-201ENST00000397906 KRTAP2-4Q9BYR9 128 aa3.22□□□□□ -1.89
TTC28-201ENST00000397906 KRTAP2-1Q9BYU5 128 aa3.22□□□□□ -1.89
TTC28-201ENST00000397906 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.21□□□□□ -1.9
TTC28-201ENST00000397906 EPPK1P58107 5090 aaKnown RBP3.21□□□□□ -1.9
TTC28-201ENST00000397906 KRTAP6-3Q3LI67 103 aa3.19□□□□□ -1.9
TTC28-201ENST00000397906 KRTAP6-2Q3LI66 62 aa3.16□□□□□ -1.9
TTC28-201ENST00000397906 HMCN2Q8NDA2 5059 aa3.14□□□□□ -1.91
TTC28-201ENST00000397906 KRTAP6-1Q3LI64 71 aa3.12□□□□□ -1.91
TTC28-201ENST00000397906 LCE1CQ5T751 118 aa3.09□□□□□ -1.91
TTC28-201ENST00000397906 LCE1EQ5T753 118 aa3.09□□□□□ -1.91
TTC28-201ENST00000397906 LCE1FQ5T754 118 aa3.09□□□□□ -1.91
TTC28-201ENST00000397906 LCE1AQ5T7P2 110 aa3.09□□□□□ -1.91
TTC28-201ENST00000397906 FAT4Q6V0I7 4981 aa3.08□□□□□ -1.92
TTC28-201ENST00000397906 KRTAP2-2Q9BYT5 123 aa3.08□□□□□ -1.92
TTC28-201ENST00000397906 LCE4AQ5TA78 99 aa3.06□□□□□ -1.92
TTC28-201ENST00000397906 ABCA13Q86UQ4 5058 aa3.05□□□□□ -1.92
TTC28-201ENST00000397906 SYNE1Q8NF91 8797 aaKnown RBP3.04□□□□□ -1.92
TTC28-201ENST00000397906 MUC2Q02817 5179 aa3.04□□□□□ -1.92
TTC28-201ENST00000397906 KRTAP9-4Q9BYQ2 154 aa3.04□□□□□ -1.92
TTC28-201ENST00000397906 KRTAP9-6A8MVA2 160 aa2.96□□□□□ -1.93
TTC28-201ENST00000397906 UBR4Q5T4S7 5183 aa2.92□□□□□ -1.94
TTC28-201ENST00000397906 RNF213Q63HN8 5207 aa2.9□□□□□ -1.94
TTC28-201ENST00000397906 KRTAP9-9Q9BYP9 154 aa2.82□□□□□ -1.96
TTC28-201ENST00000397906 KRTAP4-6Q9BYQ5 205 aa2.71□□□□□ -1.97
TTC28-201ENST00000397906 KMT2DO14686 5537 aa2.66□□□□□ -1.98
TTC28-201ENST00000397906 OBSCNQ5VST9 7968 aa2.64□□□□□ -1.99
TTC28-201ENST00000397906 KRTAP5-9P26371 169 aa2.6□□□□□ -1.99
TTC28-201ENST00000397906 KRTAP20-2Q3LI61 65 aa2.57□□□□□ -2
TTC28-201ENST00000397906 FCGBPQ9Y6R7 5405 aaPredicted RBP2.56□□□□□ -2
TTC28-201ENST00000397906 KRTAP4-11Q9BYQ6 195 aa2.54□□□□□ -2
TTC28-201ENST00000397906 KRTAP4-12Q9BQ66 201 aa2.52□□□□□ -2.01
TTC28-201ENST00000397906 KRTAP4-2Q9BYR5 136 aa2.52□□□□□ -2.01
TTC28-201ENST00000397906 KRTAP4-4Q9BYR3 166 aa2.52□□□□□ -2.01
TTC28-201ENST00000397906 MACF1Q9UPN3 7388 aaKnown RBP2.49□□□□□ -2.01
TTC28-201ENST00000397906 DSTQ03001 7570 aaKnown RBP2.45□□□□□ -2.02
TTC28-201ENST00000397906 USH2AO75445 5202 aa2.44□□□□□ -2.02
TTC28-201ENST00000397906 SSPOA2VEC9 5147 aa2.4□□□□□ -2.02
TTC28-201ENST00000397906 NEBP20929 6669 aa2.38□□□□□ -2.03
TTC28-201ENST00000397906 KRTAP5-4Q6L8H1 288 aa2.35□□□□□ -2.03
TTC28-201ENST00000397906 MUC12Q9UKN1 5478 aa2.24□□□□□ -2.05
TTC28-201ENST00000397906 MUC19Q7Z5P9 8384 aa2.23□□□□□ -2.05
TTC28-201ENST00000397906 KRTAP5-5Q701N2 237 aaPredicted RBP2.12□□□□□ -2.07
TTC28-201ENST00000397906 KRTAP5-3Q6L8H2 238 aa2.1□□□□□ -2.07
TTC28-201ENST00000397906 MDN1Q9NU22 5596 aa2.05□□□□□ -2.08
TTC28-201ENST00000397906 KRTAP5-8O75690 187 aa1.97□□□□□ -2.09
TTC28-201ENST00000397906 PHGR1C9JFL3 82 aa1.92□□□□□ -2.1
TTC28-201ENST00000397906 MUC5ACP98088 5654 aa1.8□□□□□ -2.12
TTC28-201ENST00000397906 GPR98Q8WXG9 6306 aa1.74□□□□□ -2.13
TTC28-201ENST00000397906 KRTAP5-10Q6L8G5 202 aa1.73□□□□□ -2.13
TTC28-201ENST00000397906 KRTAP5-2Q701N4 177 aa1.69□□□□□ -2.14
TTC28-201ENST00000397906 HMCN1Q96RW7 5635 aa1.68□□□□□ -2.14
TTC28-201ENST00000397906 KRTAP5-1Q6L8H4 278 aa1.61□□□□□ -2.15
TTC28-201ENST00000397906 KRTAP5-11Q6L8G4 156 aa1.56□□□□□ -2.16
TTC28-201ENST00000397906 AHNAK2Q8IVF2 5795 aa1.52□□□□□ -2.17
TTC28-201ENST00000397906 KRTAP21-2Q3LI59 83 aa1.49□□□□□ -2.17
TTC28-201ENST00000397906 MUC5BQ9HC84 5762 aaPredicted RBP1.49□□□□□ -2.17
TTC28-201ENST00000397906 AHNAKQ09666 5890 aaKnown RBP1.38□□□□□ -2.19
TTC28-201ENST00000397906 KRTAP5-7Q6L8G8 165 aa1.32□□□□□ -2.2
TTC28-201ENST00000397906 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.29□□□□□ -2.2
TTC28-201ENST00000397906 KRTAP21-1Q3LI58 79 aa1.23□□□□□ -2.21
TTC28-201ENST00000397906 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 12.2 ms