RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 MT1LQ93083 61 aa4.37□□□□□ -1.71
SHMT1-205ENST00000395684 MT1EP04732 61 aa4.36□□□□□ -1.71
SHMT1-205ENST00000395684 KRTAP19-4Q3LI73 84 aa4.31□□□□□ -1.72
SHMT1-205ENST00000395684 MACF1Q9UPN3 7388 aaKnown RBP4.26□□□□□ -1.73
SHMT1-205ENST00000395684 CRCT1Q9UGL9 99 aa4.26□□□□□ -1.73
SHMT1-205ENST00000395684 KRTAP19-6Q3LI70 58 aa4.24□□□□□ -1.73
SHMT1-205ENST00000395684 SYNE2Q8WXH0 6885 aaKnown RBP4.23□□□□□ -1.73
SHMT1-205ENST00000395684 LOC100996750A0A140TA64 210 aa4.17□□□□□ -1.74
SHMT1-205ENST00000395684 KRTAP4-3Q9BYR4 195 aa4.17□□□□□ -1.74
SHMT1-205ENST00000395684 MUC12Q9UKN1 5478 aa4.14□□□□□ -1.75
SHMT1-205ENST00000395684 KRTAP9-6A0A140TA67 174 aa4.11□□□□□ -1.75
SHMT1-205ENST00000395684 MT1GP13640 62 aa4.11□□□□□ -1.75
SHMT1-205ENST00000395684 MT1MQ8N339 61 aa4.06□□□□□ -1.76
SHMT1-205ENST00000395684 KRTAP19-3Q7Z4W3 81 aa4.05□□□□□ -1.76
SHMT1-205ENST00000395684 MDN1Q9NU22 5596 aa4.02□□□□□ -1.77
SHMT1-205ENST00000395684 DSTQ03001 7570 aaKnown RBP3.96□□□□□ -1.78
SHMT1-205ENST00000395684 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.95□□□□□ -1.78
SHMT1-205ENST00000395684 HMCN1Q96RW7 5635 aa3.95□□□□□ -1.78
SHMT1-205ENST00000395684 KRTAP12-4P60329 112 aa3.91□□□□□ -1.78
SHMT1-205ENST00000395684 LCE5AQ5TCM9 118 aa3.9□□□□□ -1.78
SHMT1-205ENST00000395684 SPRR2FQ96RM1 72 aa3.9□□□□□ -1.79
SHMT1-205ENST00000395684 LCE3BQ5TA77 95 aa3.81□□□□□ -1.8
SHMT1-205ENST00000395684 KRTAP4-9Q9BYQ8 210 aa3.78□□□□□ -1.8
SHMT1-205ENST00000395684 KRTAP9-7A8MTY7 169 aa3.77□□□□□ -1.81
SHMT1-205ENST00000395684 KRTAP5-9P26371 169 aa3.73□□□□□ -1.81
SHMT1-205ENST00000395684 KRTAP6-1Q3LI64 71 aa3.72□□□□□ -1.81
SHMT1-205ENST00000395684 SYNE1Q8NF91 8797 aaKnown RBP3.71□□□□□ -1.82
SHMT1-205ENST00000395684 KRTAP6-3Q3LI67 103 aa3.7□□□□□ -1.82
SHMT1-205ENST00000395684 MT1AP04731 61 aa3.69□□□□□ -1.82
SHMT1-205ENST00000395684 SPRR2EP22531 72 aa3.69□□□□□ -1.82
SHMT1-205ENST00000395684 SPRR2BP35325 72 aa3.69□□□□□ -1.82
SHMT1-205ENST00000395684 SPRR2AP35326 72 aa3.69□□□□□ -1.82
SHMT1-205ENST00000395684 LCE1AQ5T7P2 110 aa3.69□□□□□ -1.82
SHMT1-205ENST00000395684 NEBP20929 6669 aa3.61□□□□□ -1.83
SHMT1-205ENST00000395684 LCE3DQ9BYE3 92 aa3.61□□□□□ -1.83
SHMT1-205ENST00000395684 KRTAP5-5Q701N2 237 aaPredicted RBP3.58□□□□□ -1.84
SHMT1-205ENST00000395684 LCE3EQ5T5B0 92 aa3.57□□□□□ -1.84
SHMT1-205ENST00000395684 SPRR2DP22532 72 aa3.54□□□□□ -1.84
SHMT1-205ENST00000395684 PRM1P04553 51 aa3.47□□□□□ -1.85
SHMT1-205ENST00000395684 KRTAP9-4Q9BYQ2 154 aa3.44□□□□□ -1.86
SHMT1-205ENST00000395684 OBSCNQ5VST9 7968 aa3.37□□□□□ -1.87
SHMT1-205ENST00000395684 KRTAP6-2Q3LI66 62 aa3.35□□□□□ -1.87
SHMT1-205ENST00000395684 KRTAP20-1Q3LI63 56 aa3.28□□□□□ -1.88
SHMT1-205ENST00000395684 MT3P25713 68 aa3.27□□□□□ -1.89
SHMT1-205ENST00000395684 MT4P47944 62 aa3.2□□□□□ -1.9
SHMT1-205ENST00000395684 KRTAP2-2Q9BYT5 123 aa3.2□□□□□ -1.9
SHMT1-205ENST00000395684 KRTAP5-3Q6L8H2 238 aa3.17□□□□□ -1.9
SHMT1-205ENST00000395684 KRTAP4-6Q9BYQ5 205 aa3.16□□□□□ -1.9
SHMT1-205ENST00000395684 LCE1DQ5T752 114 aa3.09□□□□□ -1.91
SHMT1-205ENST00000395684 KRTAP5-4Q6L8H1 288 aa3.09□□□□□ -1.91
SHMT1-205ENST00000395684 LCE4AQ5TA78 99 aa2.98□□□□□ -1.93
SHMT1-205ENST00000395684 KRTAP20-2Q3LI61 65 aa2.96□□□□□ -1.94
SHMT1-205ENST00000395684 MUC5BQ9HC84 5762 aaPredicted RBP2.95□□□□□ -1.94
SHMT1-205ENST00000395684 KRTAP5-2Q701N4 177 aa2.91□□□□□ -1.94
SHMT1-205ENST00000395684 LCE1EQ5T753 118 aa2.88□□□□□ -1.95
SHMT1-205ENST00000395684 MUC5ACP98088 5654 aa2.81□□□□□ -1.96
SHMT1-205ENST00000395684 AHNAK2Q8IVF2 5795 aa2.77□□□□□ -1.97
SHMT1-205ENST00000395684 GPR98Q8WXG9 6306 aa2.71□□□□□ -1.98
SHMT1-205ENST00000395684 LCE1BQ5T7P3 118 aa2.65□□□□□ -1.99
SHMT1-205ENST00000395684 KRTAP5-10Q6L8G5 202 aa2.64□□□□□ -1.99
SHMT1-205ENST00000395684 KRTAP4-11Q9BYQ6 195 aa2.62□□□□□ -1.99
SHMT1-205ENST00000395684 KRTAP5-1Q6L8H4 278 aa2.59□□□□□ -1.99
SHMT1-205ENST00000395684 KRTAP4-2Q9BYR5 136 aa2.54□□□□□ -2
SHMT1-205ENST00000395684 LCE1CQ5T751 118 aa2.51□□□□□ -2.01
SHMT1-205ENST00000395684 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
SHMT1-205ENST00000395684 KRTAP4-12Q9BQ66 201 aa2.49□□□□□ -2.01
SHMT1-205ENST00000395684 KRTAP9-9Q9BYP9 154 aa2.49□□□□□ -2.01
SHMT1-205ENST00000395684 LCE1FQ5T754 118 aa2.42□□□□□ -2.02
SHMT1-205ENST00000395684 KRTAP21-2Q3LI59 83 aa2.4□□□□□ -2.02
SHMT1-205ENST00000395684 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.37□□□□□ -2.03
SHMT1-205ENST00000395684 KRTAP5-7Q6L8G8 165 aa2.31□□□□□ -2.04
SHMT1-205ENST00000395684 KRTAP4-4Q9BYR3 166 aa2.21□□□□□ -2.06
SHMT1-205ENST00000395684 KRTAP21-1Q3LI58 79 aa2.19□□□□□ -2.06
SHMT1-205ENST00000395684 MUC19Q7Z5P9 8384 aa2.15□□□□□ -2.07
SHMT1-205ENST00000395684 AHNAKQ09666 5890 aaKnown RBP2.13□□□□□ -2.07
SHMT1-205ENST00000395684 KRTAP5-11Q6L8G4 156 aa2.13□□□□□ -2.07
SHMT1-205ENST00000395684 PHGR1C9JFL3 82 aa1.85□□□□□ -2.11
SHMT1-205ENST00000395684 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 27.2 ms