RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 KRTAP19-5Q3LI72 72 aa5.6□□□□□ -1.51
SCAF11-204ENST00000395454 MDN1Q9NU22 5596 aa5.59□□□□□ -1.51
SCAF11-204ENST00000395454 KRTAP4-7Q9BYR0 210 aa5.56□□□□□ -1.52
SCAF11-204ENST00000395454 KRTAP19-7Q3SYF9 63 aa5.53□□□□□ -1.52
SCAF11-204ENST00000395454 LCE3BQ5TA77 95 aa5.51□□□□□ -1.53
SCAF11-204ENST00000395454 MT1EP04732 61 aa5.46□□□□□ -1.54
SCAF11-204ENST00000395454 NDUFAF8A1L188 74 aa5.45□□□□□ -1.54
SCAF11-204ENST00000395454 KRTAP9-9Q9BYP9 154 aa5.45□□□□□ -1.54
SCAF11-204ENST00000395454 KRTAP9-4Q9BYQ2 154 aa5.45□□□□□ -1.54
SCAF11-204ENST00000395454 SPRR2EP22531 72 aa5.44□□□□□ -1.54
SCAF11-204ENST00000395454 SPRR2BP35325 72 aa5.44□□□□□ -1.54
SCAF11-204ENST00000395454 SPRR2AP35326 72 aa5.44□□□□□ -1.54
SCAF11-204ENST00000395454 NEBP20929 6669 aa5.44□□□□□ -1.54
SCAF11-204ENST00000395454 LUZP6Q538Z0 58 aa5.42□□□□□ -1.54
SCAF11-204ENST00000395454 LCE1AQ5T7P2 110 aa5.41□□□□□ -1.54
SCAF11-204ENST00000395454 KRTAP19-4Q3LI73 84 aa5.4□□□□□ -1.54
SCAF11-204ENST00000395454 LCE3CQ5T5A8 94 aa5.36□□□□□ -1.55
SCAF11-204ENST00000395454 KRTAP19-3Q7Z4W3 81 aa5.33□□□□□ -1.56
SCAF11-204ENST00000395454 MT1LQ93083 61 aa5.33□□□□□ -1.56
SCAF11-204ENST00000395454 KRTAP4-2Q9BYR5 136 aa5.31□□□□□ -1.56
SCAF11-204ENST00000395454 LCE5AQ5TCM9 118 aa5.27□□□□□ -1.57
SCAF11-204ENST00000395454 SPRR2DP22532 72 aa5.25□□□□□ -1.57
SCAF11-204ENST00000395454 MT1GP13640 62 aa5.24□□□□□ -1.57
SCAF11-204ENST00000395454 DSTQ03001 7570 aaKnown RBP5.22□□□□□ -1.57
SCAF11-204ENST00000395454 KRTAP4-9Q9BYQ8 210 aa5.17□□□□□ -1.58
SCAF11-204ENST00000395454 LCE1DQ5T752 114 aa5.17□□□□□ -1.58
SCAF11-204ENST00000395454 MT1MQ8N339 61 aa5.16□□□□□ -1.58
SCAF11-204ENST00000395454 KRTAP4-12Q9BQ66 201 aa5.13□□□□□ -1.59
SCAF11-204ENST00000395454 KRTAP9-6A8MVA2 160 aa5.11□□□□□ -1.59
SCAF11-204ENST00000395454 KRTAP20-1Q3LI63 56 aa5.1□□□□□ -1.59
SCAF11-204ENST00000395454 H3BS24 57 aa5.09□□□□□ -1.6
SCAF11-204ENST00000395454 KRTAP2-3P0C7H8 128 aa5.07□□□□□ -1.6
SCAF11-204ENST00000395454 KRTAP2-4Q9BYR9 128 aa5.07□□□□□ -1.6
SCAF11-204ENST00000395454 KRTAP4-3Q9BYR4 195 aa5.05□□□□□ -1.6
SCAF11-204ENST00000395454 KRTAP2-2Q9BYT5 123 aa4.95□□□□□ -1.62
SCAF11-204ENST00000395454 KRTAP2-1Q9BYU5 128 aa4.95□□□□□ -1.62
SCAF11-204ENST00000395454 GPR98Q8WXG9 6306 aa4.93□□□□□ -1.62
SCAF11-204ENST00000395454 A0A0A0MQY5 61 aa4.82□□□□□ -1.64
SCAF11-204ENST00000395454 KRTAP4-11Q9BYQ6 195 aa4.78□□□□□ -1.64
SCAF11-204ENST00000395454 KRTAP5-5Q701N2 237 aaPredicted RBP4.68□□□□□ -1.66
SCAF11-204ENST00000395454 LCE4AQ5TA78 99 aa4.63□□□□□ -1.67
SCAF11-204ENST00000395454 KRTAP5-4Q6L8H1 288 aa4.63□□□□□ -1.67
SCAF11-204ENST00000395454 MT4P47944 62 aa4.58□□□□□ -1.68
SCAF11-204ENST00000395454 INE1O15225 51 aa4.55□□□□□ -1.68
SCAF11-204ENST00000395454 MT1AP04731 61 aa4.53□□□□□ -1.68
SCAF11-204ENST00000395454 SYNE1Q8NF91 8797 aaKnown RBP4.52□□□□□ -1.69
SCAF11-204ENST00000395454 HMCN1Q96RW7 5635 aa4.51□□□□□ -1.69
SCAF11-204ENST00000395454 KRTAP6-1Q3LI64 71 aa4.47□□□□□ -1.69
SCAF11-204ENST00000395454 KRTAP12-4P60329 112 aa4.46□□□□□ -1.69
SCAF11-204ENST00000395454 KRTAP20-2Q3LI61 65 aa4.36□□□□□ -1.71
SCAF11-204ENST00000395454 KRTAP6-2Q3LI66 62 aa4.19□□□□□ -1.74
SCAF11-204ENST00000395454 KRTAP5-2Q701N4 177 aa4.13□□□□□ -1.75
SCAF11-204ENST00000395454 AHNAK2Q8IVF2 5795 aa4.11□□□□□ -1.75
SCAF11-204ENST00000395454 MT3P25713 68 aa4.1□□□□□ -1.75
SCAF11-204ENST00000395454 OBSCNQ5VST9 7968 aa4.08□□□□□ -1.76
SCAF11-204ENST00000395454 LCE3DQ9BYE3 92 aa4.04□□□□□ -1.76
SCAF11-204ENST00000395454 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.98□□□□□ -1.77
SCAF11-204ENST00000395454 KRTAP5-10Q6L8G5 202 aa3.96□□□□□ -1.78
SCAF11-204ENST00000395454 LCE3EQ5T5B0 92 aa3.95□□□□□ -1.78
SCAF11-204ENST00000395454 MUC5BQ9HC84 5762 aaPredicted RBP3.84□□□□□ -1.79
SCAF11-204ENST00000395454 KRTAP5-7Q6L8G8 165 aa3.83□□□□□ -1.8
SCAF11-204ENST00000395454 AHNAKQ09666 5890 aaKnown RBP3.82□□□□□ -1.8
SCAF11-204ENST00000395454 KRTAP5-8O75690 187 aa3.72□□□□□ -1.81
SCAF11-204ENST00000395454 KRTAP5-1Q6L8H4 278 aa3.64□□□□□ -1.83
SCAF11-204ENST00000395454 LCE1EQ5T753 118 aa3.63□□□□□ -1.83
SCAF11-204ENST00000395454 MUC5ACP98088 5654 aa3.53□□□□□ -1.84
SCAF11-204ENST00000395454 PRM1P04553 51 aa3.52□□□□□ -1.85
SCAF11-204ENST00000395454 LCE1BQ5T7P3 118 aa3.44□□□□□ -1.86
SCAF11-204ENST00000395454 LCE1CQ5T751 118 aa3.38□□□□□ -1.87
SCAF11-204ENST00000395454 KRTAP4-4Q9BYR3 166 aa3.23□□□□□ -1.89
SCAF11-204ENST00000395454 KRTAP5-11Q6L8G4 156 aa3.15□□□□□ -1.9
SCAF11-204ENST00000395454 KRTAP21-2Q3LI59 83 aa2.95□□□□□ -1.94
SCAF11-204ENST00000395454 LCE1FQ5T754 118 aa2.81□□□□□ -1.96
SCAF11-204ENST00000395454 PHGR1C9JFL3 82 aa2.6□□□□□ -1.99
SCAF11-204ENST00000395454 MUC19Q7Z5P9 8384 aa2.45□□□□□ -2.02
SCAF11-204ENST00000395454 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
SCAF11-204ENST00000395454 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 65.3 ms