RNA–Protein interactions for RNA: ENST00000392455.7

CCDC50-201, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC50, Length 8,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-201ENST00000392455 MUC17Q685J3 4493 aa4.29□□□□□ -1.72
CCDC50-201ENST00000392455 BIRC6Q9NR09 4857 aa4.29□□□□□ -1.72
CCDC50-201ENST00000392455 KRTAP19-2Q3LHN2 52 aa4.28□□□□□ -1.72
CCDC50-201ENST00000392455 MT1AP04731 61 aa4.25□□□□□ -1.73
CCDC50-201ENST00000392455 HERC1Q15751 4861 aa4.23□□□□□ -1.73
CCDC50-201ENST00000392455 HYDINQ4G0P3 5121 aa4.23□□□□□ -1.73
CCDC50-201ENST00000392455 KRTAP20-1Q3LI63 56 aa4.22□□□□□ -1.73
CCDC50-201ENST00000392455 LCE5AQ5TCM9 118 aa4.22□□□□□ -1.73
CCDC50-201ENST00000392455 KRTAP4-9Q9BYQ8 210 aa4.13□□□□□ -1.75
CCDC50-201ENST00000392455 KRTAP9-7A8MTY7 169 aa4.13□□□□□ -1.75
CCDC50-201ENST00000392455 KRTAP2-3P0C7H8 128 aa4.12□□□□□ -1.75
CCDC50-201ENST00000392455 KRTAP2-4Q9BYR9 128 aa4.12□□□□□ -1.75
CCDC50-201ENST00000392455 KRTAP2-1Q9BYU5 128 aa4.12□□□□□ -1.75
CCDC50-201ENST00000392455 KMT2CQ8NEZ4 4911 aaKnown RBP4.11□□□□□ -1.75
CCDC50-201ENST00000392455 LCE2AQ5TA79 106 aaPredicted RBP4.11□□□□□ -1.75
CCDC50-201ENST00000392455 EPPK1P58107 5090 aaKnown RBP4.06□□□□□ -1.76
CCDC50-201ENST00000392455 KRTAP19-7Q3SYF9 63 aa4.02□□□□□ -1.77
CCDC50-201ENST00000392455 LCE1CQ5T751 118 aa4.02□□□□□ -1.77
CCDC50-201ENST00000392455 LCE1EQ5T753 118 aa4.02□□□□□ -1.77
CCDC50-201ENST00000392455 LCE1FQ5T754 118 aa4.02□□□□□ -1.77
CCDC50-201ENST00000392455 LCE1AQ5T7P2 110 aa4.02□□□□□ -1.77
CCDC50-201ENST00000392455 KRTAP6-3Q3LI67 103 aa4□□□□□ -1.77
CCDC50-201ENST00000392455 LCE4AQ5TA78 99 aa3.99□□□□□ -1.77
CCDC50-201ENST00000392455 SYNE2Q8WXH0 6885 aaKnown RBP3.98□□□□□ -1.77
CCDC50-201ENST00000392455 KRTAP6-2Q3LI66 62 aa3.92□□□□□ -1.78
CCDC50-201ENST00000392455 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.9□□□□□ -1.79
CCDC50-201ENST00000392455 KRTAP6-1Q3LI64 71 aa3.87□□□□□ -1.79
CCDC50-201ENST00000392455 KRTAP2-2Q9BYT5 123 aa3.84□□□□□ -1.79
CCDC50-201ENST00000392455 KRTAP9-4Q9BYQ2 154 aa3.83□□□□□ -1.8
CCDC50-201ENST00000392455 FSIP2Q5CZC0 6907 aa3.8□□□□□ -1.8
CCDC50-201ENST00000392455 HMCN2Q8NDA2 5059 aa3.76□□□□□ -1.81
CCDC50-201ENST00000392455 RNF213Q63HN8 5207 aa3.73□□□□□ -1.81
CCDC50-201ENST00000392455 KRTAP9-9Q9BYP9 154 aa3.69□□□□□ -1.82
CCDC50-201ENST00000392455 KRTAP9-6A8MVA2 160 aa3.69□□□□□ -1.82
CCDC50-201ENST00000392455 SYNE1Q8NF91 8797 aaKnown RBP3.69□□□□□ -1.82
CCDC50-201ENST00000392455 UBR4Q5T4S7 5183 aa3.69□□□□□ -1.82
CCDC50-201ENST00000392455 FAT4Q6V0I7 4981 aa3.68□□□□□ -1.82
CCDC50-201ENST00000392455 MUC2Q02817 5179 aa3.63□□□□□ -1.83
CCDC50-201ENST00000392455 ABCA13Q86UQ4 5058 aa3.62□□□□□ -1.83
CCDC50-201ENST00000392455 OBSCNQ5VST9 7968 aa3.3□□□□□ -1.88
CCDC50-201ENST00000392455 KRTAP4-11Q9BYQ6 195 aa3.28□□□□□ -1.88
CCDC50-201ENST00000392455 KRTAP5-9P26371 169 aa3.25□□□□□ -1.89
CCDC50-201ENST00000392455 NEBP20929 6669 aa3.23□□□□□ -1.89
CCDC50-201ENST00000392455 KRTAP4-6Q9BYQ5 205 aa3.19□□□□□ -1.9
CCDC50-201ENST00000392455 KRTAP20-2Q3LI61 65 aa3.14□□□□□ -1.91
CCDC50-201ENST00000392455 DSTQ03001 7570 aaKnown RBP3.09□□□□□ -1.91
CCDC50-201ENST00000392455 KMT2DO14686 5537 aa3.08□□□□□ -1.92
CCDC50-201ENST00000392455 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
CCDC50-201ENST00000392455 MACF1Q9UPN3 7388 aaKnown RBP3.04□□□□□ -1.92
CCDC50-201ENST00000392455 USH2AO75445 5202 aa3.01□□□□□ -1.93
CCDC50-201ENST00000392455 KRTAP4-12Q9BQ66 201 aa3.01□□□□□ -1.93
CCDC50-201ENST00000392455 KRTAP4-2Q9BYR5 136 aa3.01□□□□□ -1.93
CCDC50-201ENST00000392455 FCGBPQ9Y6R7 5405 aaPredicted RBP2.99□□□□□ -1.93
CCDC50-201ENST00000392455 SSPOA2VEC9 5147 aa2.95□□□□□ -1.94
CCDC50-201ENST00000392455 KRTAP5-4Q6L8H1 288 aa2.94□□□□□ -1.94
CCDC50-201ENST00000392455 GPR98Q8WXG9 6306 aa2.85□□□□□ -1.95
CCDC50-201ENST00000392455 MDN1Q9NU22 5596 aa2.76□□□□□ -1.97
CCDC50-201ENST00000392455 KRTAP5-5Q701N2 237 aaPredicted RBP2.75□□□□□ -1.97
CCDC50-201ENST00000392455 MUC12Q9UKN1 5478 aa2.64□□□□□ -1.99
CCDC50-201ENST00000392455 KRTAP5-3Q6L8H2 238 aa2.59□□□□□ -2
CCDC50-201ENST00000392455 MUC19Q7Z5P9 8384 aa2.55□□□□□ -2
CCDC50-201ENST00000392455 MUC5ACP98088 5654 aa2.41□□□□□ -2.02
CCDC50-201ENST00000392455 KRTAP5-8O75690 187 aa2.34□□□□□ -2.03
CCDC50-201ENST00000392455 AHNAK2Q8IVF2 5795 aa2.3□□□□□ -2.04
CCDC50-201ENST00000392455 PHGR1C9JFL3 82 aa2.29□□□□□ -2.04
CCDC50-201ENST00000392455 KRTAP5-10Q6L8G5 202 aa2.19□□□□□ -2.06
CCDC50-201ENST00000392455 HMCN1Q96RW7 5635 aa2.15□□□□□ -2.07
CCDC50-201ENST00000392455 KRTAP5-2Q701N4 177 aa2.12□□□□□ -2.07
CCDC50-201ENST00000392455 MUC5BQ9HC84 5762 aaPredicted RBP2.11□□□□□ -2.07
CCDC50-201ENST00000392455 AHNAKQ09666 5890 aaKnown RBP2□□□□□ -2.09
CCDC50-201ENST00000392455 KRTAP5-11Q6L8G4 156 aa1.99□□□□□ -2.09
CCDC50-201ENST00000392455 KRTAP5-1Q6L8H4 278 aa1.98□□□□□ -2.09
CCDC50-201ENST00000392455 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
CCDC50-201ENST00000392455 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
CCDC50-201ENST00000392455 KRTAP5-7Q6L8G8 165 aa1.77□□□□□ -2.13
CCDC50-201ENST00000392455 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
CCDC50-201ENST00000392455 MUC16Q8WXI7 14507 aa1.45□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 13.2 ms