RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 MT1EP04732 61 aa4.02□□□□□ -1.77
CCDC88C-204ENST00000389857 LCE1BQ5T7P3 118 aa4□□□□□ -1.77
CCDC88C-204ENST00000389857 PRM1P04553 51 aa3.97□□□□□ -1.77
CCDC88C-204ENST00000389857 KRTAP4-7Q9BYR0 210 aa3.96□□□□□ -1.78
CCDC88C-204ENST00000389857 MUC2Q02817 5179 aa3.96□□□□□ -1.78
CCDC88C-204ENST00000389857 LCE1DQ5T752 114 aa3.93□□□□□ -1.78
CCDC88C-204ENST00000389857 MT1MQ8N339 61 aa3.92□□□□□ -1.78
CCDC88C-204ENST00000389857 FAT4Q6V0I7 4981 aa3.92□□□□□ -1.78
CCDC88C-204ENST00000389857 KRTAP9-2Q9BYQ4 174 aa3.91□□□□□ -1.78
CCDC88C-204ENST00000389857 KRTAP9-6A0A140TA67 174 aa3.83□□□□□ -1.8
CCDC88C-204ENST00000389857 KRTAP19-6Q3LI70 58 aa3.82□□□□□ -1.8
CCDC88C-204ENST00000389857 LCE5AQ5TCM9 118 aa3.81□□□□□ -1.8
CCDC88C-204ENST00000389857 LOC100996750A0A140TA64 210 aa3.81□□□□□ -1.8
CCDC88C-204ENST00000389857 KRTAP20-1Q3LI63 56 aa3.78□□□□□ -1.8
CCDC88C-204ENST00000389857 KRTAP4-3Q9BYR4 195 aa3.71□□□□□ -1.82
CCDC88C-204ENST00000389857 MT1AP04731 61 aa3.69□□□□□ -1.82
CCDC88C-204ENST00000389857 LCE1CQ5T751 118 aa3.65□□□□□ -1.83
CCDC88C-204ENST00000389857 LCE1EQ5T753 118 aa3.65□□□□□ -1.83
CCDC88C-204ENST00000389857 LCE1FQ5T754 118 aa3.65□□□□□ -1.83
CCDC88C-204ENST00000389857 LCE1AQ5T7P2 110 aa3.65□□□□□ -1.83
CCDC88C-204ENST00000389857 KRTAP2-3P0C7H8 128 aa3.61□□□□□ -1.83
CCDC88C-204ENST00000389857 KRTAP2-4Q9BYR9 128 aa3.61□□□□□ -1.83
CCDC88C-204ENST00000389857 KRTAP2-1Q9BYU5 128 aa3.61□□□□□ -1.83
CCDC88C-204ENST00000389857 FSIP2Q5CZC0 6907 aa3.61□□□□□ -1.83
CCDC88C-204ENST00000389857 KRTAP9-7A8MTY7 169 aa3.59□□□□□ -1.83
CCDC88C-204ENST00000389857 KRTAP19-7Q3SYF9 63 aa3.53□□□□□ -1.84
CCDC88C-204ENST00000389857 KRTAP4-9Q9BYQ8 210 aa3.53□□□□□ -1.84
CCDC88C-204ENST00000389857 LCE2AQ5TA79 106 aaPredicted RBP3.53□□□□□ -1.85
CCDC88C-204ENST00000389857 USH2AO75445 5202 aa3.51□□□□□ -1.85
CCDC88C-204ENST00000389857 LCE4AQ5TA78 99 aa3.44□□□□□ -1.86
CCDC88C-204ENST00000389857 KRTAP6-2Q3LI66 62 aa3.44□□□□□ -1.86
CCDC88C-204ENST00000389857 KRTAP9-4Q9BYQ2 154 aa3.43□□□□□ -1.86
CCDC88C-204ENST00000389857 SYNE2Q8WXH0 6885 aaKnown RBP3.41□□□□□ -1.86
CCDC88C-204ENST00000389857 KRTAP6-3Q3LI67 103 aa3.39□□□□□ -1.87
CCDC88C-204ENST00000389857 KRTAP6-1Q3LI64 71 aa3.38□□□□□ -1.87
CCDC88C-204ENST00000389857 KRTAP9-6A8MVA2 160 aa3.38□□□□□ -1.87
CCDC88C-204ENST00000389857 SSPOA2VEC9 5147 aa3.36□□□□□ -1.87
CCDC88C-204ENST00000389857 KRTAP2-2Q9BYT5 123 aa3.28□□□□□ -1.88
CCDC88C-204ENST00000389857 SYNE1Q8NF91 8797 aaKnown RBP3.27□□□□□ -1.89
CCDC88C-204ENST00000389857 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.27□□□□□ -1.89
CCDC88C-204ENST00000389857 KRTAP9-9Q9BYP9 154 aa3.21□□□□□ -1.9
CCDC88C-204ENST00000389857 KMT2DO14686 5537 aa3.15□□□□□ -1.9
CCDC88C-204ENST00000389857 FCGBPQ9Y6R7 5405 aaPredicted RBP3.13□□□□□ -1.91
CCDC88C-204ENST00000389857 DSTQ03001 7570 aaKnown RBP3.01□□□□□ -1.93
CCDC88C-204ENST00000389857 MUC12Q9UKN1 5478 aa2.99□□□□□ -1.93
CCDC88C-204ENST00000389857 MACF1Q9UPN3 7388 aaKnown RBP2.97□□□□□ -1.93
CCDC88C-204ENST00000389857 OBSCNQ5VST9 7968 aa2.93□□□□□ -1.94
CCDC88C-204ENST00000389857 KRTAP20-2Q3LI61 65 aa2.92□□□□□ -1.94
CCDC88C-204ENST00000389857 MDN1Q9NU22 5596 aa2.89□□□□□ -1.95
CCDC88C-204ENST00000389857 KRTAP4-11Q9BYQ6 195 aa2.87□□□□□ -1.95
CCDC88C-204ENST00000389857 KRTAP4-6Q9BYQ5 205 aa2.78□□□□□ -1.96
CCDC88C-204ENST00000389857 KRTAP5-9P26371 169 aa2.78□□□□□ -1.96
CCDC88C-204ENST00000389857 KRTAP4-12Q9BQ66 201 aa2.75□□□□□ -1.97
CCDC88C-204ENST00000389857 KRTAP4-2Q9BYR5 136 aa2.75□□□□□ -1.97
CCDC88C-204ENST00000389857 KRTAP4-4Q9BYR3 166 aa2.72□□□□□ -1.97
CCDC88C-204ENST00000389857 KRTAP5-5Q701N2 237 aaPredicted RBP2.64□□□□□ -1.99
CCDC88C-204ENST00000389857 NEBP20929 6669 aa2.59□□□□□ -1.99
CCDC88C-204ENST00000389857 KRTAP5-4Q6L8H1 288 aa2.57□□□□□ -2
CCDC88C-204ENST00000389857 MUC19Q7Z5P9 8384 aa2.4□□□□□ -2.02
CCDC88C-204ENST00000389857 HMCN1Q96RW7 5635 aa2.29□□□□□ -2.04
CCDC88C-204ENST00000389857 KRTAP5-3Q6L8H2 238 aa2.21□□□□□ -2.06
CCDC88C-204ENST00000389857 PHGR1C9JFL3 82 aa2.2□□□□□ -2.06
CCDC88C-204ENST00000389857 KRTAP5-2Q701N4 177 aa2.19□□□□□ -2.06
CCDC88C-204ENST00000389857 GPR98Q8WXG9 6306 aa2.18□□□□□ -2.06
CCDC88C-204ENST00000389857 MUC5ACP98088 5654 aa2.14□□□□□ -2.07
CCDC88C-204ENST00000389857 KRTAP5-10Q6L8G5 202 aa2.02□□□□□ -2.09
CCDC88C-204ENST00000389857 AHNAK2Q8IVF2 5795 aa2.02□□□□□ -2.09
CCDC88C-204ENST00000389857 KRTAP5-8O75690 187 aa1.95□□□□□ -2.1
CCDC88C-204ENST00000389857 KRTAP5-1Q6L8H4 278 aa1.9□□□□□ -2.11
CCDC88C-204ENST00000389857 MUC5BQ9HC84 5762 aaPredicted RBP1.86□□□□□ -2.11
CCDC88C-204ENST00000389857 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.83□□□□□ -2.12
CCDC88C-204ENST00000389857 KRTAP21-2Q3LI59 83 aa1.79□□□□□ -2.12
CCDC88C-204ENST00000389857 KRTAP5-11Q6L8G4 156 aa1.75□□□□□ -2.13
CCDC88C-204ENST00000389857 KRTAP5-7Q6L8G8 165 aa1.68□□□□□ -2.14
CCDC88C-204ENST00000389857 AHNAKQ09666 5890 aaKnown RBP1.66□□□□□ -2.14
CCDC88C-204ENST00000389857 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
CCDC88C-204ENST00000389857 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 80.4 ms