RNA–Protein interactions for RNA: ENST00000381431.9

SGCB-201, Transcript of sarcoglycan beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SGCB, Length 4,431 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCB-201ENST00000381431 DSTQ03001 7570 aaKnown RBP5.61□□□□□ -1.51
SGCB-201ENST00000381431 KRTAP19-3Q7Z4W3 81 aa5.6□□□□□ -1.51
SGCB-201ENST00000381431 USH2AO75445 5202 aa5.56□□□□□ -1.52
SGCB-201ENST00000381431 SPRR2DP22532 72 aa5.51□□□□□ -1.53
SGCB-201ENST00000381431 LCE3DQ9BYE3 92 aa5.51□□□□□ -1.53
SGCB-201ENST00000381431 FCGBPQ9Y6R7 5405 aaPredicted RBP5.5□□□□□ -1.53
SGCB-201ENST00000381431 KMT2DO14686 5537 aa5.49□□□□□ -1.53
SGCB-201ENST00000381431 KRTAP4-3Q9BYR4 195 aa5.47□□□□□ -1.53
SGCB-201ENST00000381431 LOC100996750A0A140TA64 210 aa5.46□□□□□ -1.54
SGCB-201ENST00000381431 KRTAP19-7Q3SYF9 63 aa5.42□□□□□ -1.54
SGCB-201ENST00000381431 MT1MQ8N339 61 aa5.41□□□□□ -1.54
SGCB-201ENST00000381431 LCE3EQ5T5B0 92 aa5.41□□□□□ -1.54
SGCB-201ENST00000381431 LCE2AQ5TA79 106 aaPredicted RBP5.39□□□□□ -1.55
SGCB-201ENST00000381431 KRTAP19-6Q3LI70 58 aa5.36□□□□□ -1.55
SGCB-201ENST00000381431 SYNE2Q8WXH0 6885 aaKnown RBP5.2□□□□□ -1.58
SGCB-201ENST00000381431 KRTAP9-6A8MVA2 160 aa5.16□□□□□ -1.58
SGCB-201ENST00000381431 KRTAP9-2Q9BYQ4 174 aa5.11□□□□□ -1.59
SGCB-201ENST00000381431 KRTAP4-9Q9BYQ8 210 aa5.11□□□□□ -1.59
SGCB-201ENST00000381431 KRTAP2-3P0C7H8 128 aa5.08□□□□□ -1.6
SGCB-201ENST00000381431 KRTAP2-4Q9BYR9 128 aa5.08□□□□□ -1.6
SGCB-201ENST00000381431 KRTAP2-1Q9BYU5 128 aa5.08□□□□□ -1.6
SGCB-201ENST00000381431 LCE2DQ5TA82 110 aaPredicted RBP5.07□□□□□ -1.6
SGCB-201ENST00000381431 MT3P25713 68 aa5.06□□□□□ -1.6
SGCB-201ENST00000381431 PRM1P04553 51 aa5.06□□□□□ -1.6
SGCB-201ENST00000381431 MT4P47944 62 aa5.02□□□□□ -1.61
SGCB-201ENST00000381431 MT1AP04731 61 aa4.96□□□□□ -1.62
SGCB-201ENST00000381431 MUC12Q9UKN1 5478 aa4.93□□□□□ -1.62
SGCB-201ENST00000381431 MACF1Q9UPN3 7388 aaKnown RBP4.84□□□□□ -1.63
SGCB-201ENST00000381431 KRTAP6-1Q3LI64 71 aa4.82□□□□□ -1.64
SGCB-201ENST00000381431 LCE1DQ5T752 114 aa4.81□□□□□ -1.64
SGCB-201ENST00000381431 LCE1BQ5T7P3 118 aa4.8□□□□□ -1.64
SGCB-201ENST00000381431 LCE5AQ5TCM9 118 aa4.79□□□□□ -1.64
SGCB-201ENST00000381431 LCE1AQ5T7P2 110 aa4.68□□□□□ -1.66
SGCB-201ENST00000381431 KRTAP6-2Q3LI66 62 aa4.65□□□□□ -1.66
SGCB-201ENST00000381431 SSPOA2VEC9 5147 aa4.65□□□□□ -1.67
SGCB-201ENST00000381431 KRTAP9-6A0A140TA67 174 aa4.63□□□□□ -1.67
SGCB-201ENST00000381431 KRTAP9-4Q9BYQ2 154 aa4.54□□□□□ -1.68
SGCB-201ENST00000381431 KRTAP9-7A8MTY7 169 aa4.54□□□□□ -1.68
SGCB-201ENST00000381431 KRTAP6-3Q3LI67 103 aa4.49□□□□□ -1.69
SGCB-201ENST00000381431 MUC19Q7Z5P9 8384 aa4.47□□□□□ -1.69
SGCB-201ENST00000381431 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.45□□□□□ -1.7
SGCB-201ENST00000381431 MDN1Q9NU22 5596 aa4.45□□□□□ -1.7
SGCB-201ENST00000381431 KRTAP20-1Q3LI63 56 aa4.29□□□□□ -1.72
SGCB-201ENST00000381431 LCE4AQ5TA78 99 aa4.23□□□□□ -1.73
SGCB-201ENST00000381431 KRTAP2-2Q9BYT5 123 aa4.18□□□□□ -1.74
SGCB-201ENST00000381431 KRTAP5-9P26371 169 aa4.11□□□□□ -1.75
SGCB-201ENST00000381431 NEBP20929 6669 aa4.07□□□□□ -1.76
SGCB-201ENST00000381431 KRTAP4-6Q9BYQ5 205 aa4.02□□□□□ -1.77
SGCB-201ENST00000381431 KRTAP5-5Q701N2 237 aaPredicted RBP3.94□□□□□ -1.78
SGCB-201ENST00000381431 LCE1CQ5T751 118 aa3.88□□□□□ -1.79
SGCB-201ENST00000381431 LCE1EQ5T753 118 aa3.88□□□□□ -1.79
SGCB-201ENST00000381431 LCE1FQ5T754 118 aa3.88□□□□□ -1.79
SGCB-201ENST00000381431 KRTAP20-2Q3LI61 65 aa3.83□□□□□ -1.8
SGCB-201ENST00000381431 KRTAP4-11Q9BYQ6 195 aa3.81□□□□□ -1.8
SGCB-201ENST00000381431 GPR98Q8WXG9 6306 aa3.73□□□□□ -1.81
SGCB-201ENST00000381431 MUC5ACP98088 5654 aa3.7□□□□□ -1.82
SGCB-201ENST00000381431 HMCN1Q96RW7 5635 aa3.58□□□□□ -1.84
SGCB-201ENST00000381431 KRTAP9-9Q9BYP9 154 aa3.56□□□□□ -1.84
SGCB-201ENST00000381431 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
SGCB-201ENST00000381431 KRTAP4-12Q9BQ66 201 aa3.44□□□□□ -1.86
SGCB-201ENST00000381431 KRTAP4-2Q9BYR5 136 aa3.44□□□□□ -1.86
SGCB-201ENST00000381431 KRTAP5-4Q6L8H1 288 aa3.42□□□□□ -1.86
SGCB-201ENST00000381431 AHNAK2Q8IVF2 5795 aa3.24□□□□□ -1.89
SGCB-201ENST00000381431 KRTAP5-3Q6L8H2 238 aa3.08□□□□□ -1.92
SGCB-201ENST00000381431 KRTAP5-10Q6L8G5 202 aa2.98□□□□□ -1.93
SGCB-201ENST00000381431 KRTAP5-2Q701N4 177 aa2.94□□□□□ -1.94
SGCB-201ENST00000381431 KRTAP5-8O75690 187 aa2.89□□□□□ -1.95
SGCB-201ENST00000381431 MUC5BQ9HC84 5762 aaPredicted RBP2.78□□□□□ -1.96
SGCB-201ENST00000381431 AHNAKQ09666 5890 aaKnown RBP2.7□□□□□ -1.98
SGCB-201ENST00000381431 KRTAP5-1Q6L8H4 278 aa2.63□□□□□ -1.99
SGCB-201ENST00000381431 KRTAP21-2Q3LI59 83 aa2.58□□□□□ -2
SGCB-201ENST00000381431 KRTAP5-11Q6L8G4 156 aa2.54□□□□□ -2
SGCB-201ENST00000381431 KRTAP21-1Q3LI58 79 aa2.44□□□□□ -2.02
SGCB-201ENST00000381431 KRTAP5-7Q6L8G8 165 aa2.35□□□□□ -2.03
SGCB-201ENST00000381431 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.32□□□□□ -2.04
SGCB-201ENST00000381431 PHGR1C9JFL3 82 aa2.31□□□□□ -2.04
SGCB-201ENST00000381431 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 100.7 ms