RNA–Protein interactions for RNA: ENST00000378726.1

SSU72-204, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 2,238 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-204ENST00000378726 KRTAP19-4Q3LI73 84 aa6.78□□□□□ -1.32
SSU72-204ENST00000378726 KRTAP4-7Q9BYR0 210 aa6.74□□□□□ -1.33
SSU72-204ENST00000378726 MUC12Q9UKN1 5478 aa6.73□□□□□ -1.33
SSU72-204ENST00000378726 SPRR2FQ96RM1 72 aa6.72□□□□□ -1.33
SSU72-204ENST00000378726 KRTAP9-6A8MVA2 160 aa6.7□□□□□ -1.34
SSU72-204ENST00000378726 SYNE2Q8WXH0 6885 aaKnown RBP6.7□□□□□ -1.34
SSU72-204ENST00000378726 KRTAP19-3Q7Z4W3 81 aa6.65□□□□□ -1.35
SSU72-204ENST00000378726 MT1GP13640 62 aa6.61□□□□□ -1.35
SSU72-204ENST00000378726 MT1MQ8N339 61 aa6.54□□□□□ -1.36
SSU72-204ENST00000378726 KRTAP5-9P26371 169 aa6.52□□□□□ -1.37
SSU72-204ENST00000378726 KRTAP9-6A0A140TA67 174 aa6.51□□□□□ -1.37
SSU72-204ENST00000378726 LCE5AQ5TCM9 118 aa6.51□□□□□ -1.37
SSU72-204ENST00000378726 KRTAP4-3Q9BYR4 195 aa6.49□□□□□ -1.37
SSU72-204ENST00000378726 KRTAP2-3P0C7H8 128 aa6.48□□□□□ -1.37
SSU72-204ENST00000378726 KRTAP2-4Q9BYR9 128 aa6.48□□□□□ -1.37
SSU72-204ENST00000378726 KRTAP2-1Q9BYU5 128 aa6.48□□□□□ -1.37
SSU72-204ENST00000378726 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.42□□□□□ -1.38
SSU72-204ENST00000378726 MDN1Q9NU22 5596 aa6.4□□□□□ -1.38
SSU72-204ENST00000378726 LCE1AQ5T7P2 110 aa6.38□□□□□ -1.39
SSU72-204ENST00000378726 DSTQ03001 7570 aaKnown RBP6.33□□□□□ -1.4
SSU72-204ENST00000378726 KRTAP6-3Q3LI67 103 aa6.33□□□□□ -1.4
SSU72-204ENST00000378726 LOC100996750A0A140TA64 210 aa6.31□□□□□ -1.4
SSU72-204ENST00000378726 SPRR2EP22531 72 aa6.3□□□□□ -1.4
SSU72-204ENST00000378726 SPRR2BP35325 72 aa6.3□□□□□ -1.4
SSU72-204ENST00000378726 SPRR2AP35326 72 aa6.3□□□□□ -1.4
SSU72-204ENST00000378726 SPRR2DP22532 72 aa6.06□□□□□ -1.44
SSU72-204ENST00000378726 KRTAP9-7A8MTY7 169 aa6.01□□□□□ -1.45
SSU72-204ENST00000378726 NEBP20929 6669 aa5.9□□□□□ -1.47
SSU72-204ENST00000378726 KRTAP5-5Q701N2 237 aaPredicted RBP5.86□□□□□ -1.47
SSU72-204ENST00000378726 LCE3BQ5TA77 95 aa5.81□□□□□ -1.48
SSU72-204ENST00000378726 MT1AP04731 61 aa5.79□□□□□ -1.48
SSU72-204ENST00000378726 KRTAP6-1Q3LI64 71 aa5.79□□□□□ -1.48
SSU72-204ENST00000378726 KRTAP12-4P60329 112 aa5.76□□□□□ -1.49
SSU72-204ENST00000378726 SYNE1Q8NF91 8797 aaKnown RBP5.71□□□□□ -1.5
SSU72-204ENST00000378726 KRTAP4-9Q9BYQ8 210 aa5.57□□□□□ -1.52
SSU72-204ENST00000378726 KRTAP9-4Q9BYQ2 154 aa5.52□□□□□ -1.53
SSU72-204ENST00000378726 KRTAP5-4Q6L8H1 288 aa5.49□□□□□ -1.53
SSU72-204ENST00000378726 KRTAP2-2Q9BYT5 123 aa5.4□□□□□ -1.54
SSU72-204ENST00000378726 LCE4AQ5TA78 99 aa5.34□□□□□ -1.55
SSU72-204ENST00000378726 KRTAP20-1Q3LI63 56 aa5.33□□□□□ -1.56
SSU72-204ENST00000378726 LCE3DQ9BYE3 92 aa5.32□□□□□ -1.56
SSU72-204ENST00000378726 KRTAP6-2Q3LI66 62 aa5.31□□□□□ -1.56
SSU72-204ENST00000378726 MT4P47944 62 aa5.3□□□□□ -1.56
SSU72-204ENST00000378726 KRTAP4-6Q9BYQ5 205 aa5.28□□□□□ -1.56
SSU72-204ENST00000378726 MT3P25713 68 aa5.26□□□□□ -1.57
SSU72-204ENST00000378726 LCE3EQ5T5B0 92 aa5.26□□□□□ -1.57
SSU72-204ENST00000378726 KRTAP20-2Q3LI61 65 aa5.15□□□□□ -1.58
SSU72-204ENST00000378726 LCE1DQ5T752 114 aa5.15□□□□□ -1.59
SSU72-204ENST00000378726 PRM1P04553 51 aa5.13□□□□□ -1.59
SSU72-204ENST00000378726 HMCN1Q96RW7 5635 aa5.12□□□□□ -1.59
SSU72-204ENST00000378726 OBSCNQ5VST9 7968 aa5.04□□□□□ -1.6
SSU72-204ENST00000378726 KRTAP5-2Q701N4 177 aa5.01□□□□□ -1.61
SSU72-204ENST00000378726 KRTAP5-3Q6L8H2 238 aa4.95□□□□□ -1.62
SSU72-204ENST00000378726 LCE1EQ5T753 118 aa4.5□□□□□ -1.69
SSU72-204ENST00000378726 KRTAP4-11Q9BYQ6 195 aa4.43□□□□□ -1.7
SSU72-204ENST00000378726 AHNAK2Q8IVF2 5795 aa4.39□□□□□ -1.71
SSU72-204ENST00000378726 KRTAP5-1Q6L8H4 278 aa4.33□□□□□ -1.72
SSU72-204ENST00000378726 LCE1BQ5T7P3 118 aa4.3□□□□□ -1.72
SSU72-204ENST00000378726 MUC5ACP98088 5654 aa4.28□□□□□ -1.72
SSU72-204ENST00000378726 KRTAP5-8O75690 187 aa4.25□□□□□ -1.73
SSU72-204ENST00000378726 KRTAP5-10Q6L8G5 202 aa4.23□□□□□ -1.73
SSU72-204ENST00000378726 LCE1CQ5T751 118 aa4.21□□□□□ -1.74
SSU72-204ENST00000378726 KRTAP4-2Q9BYR5 136 aa4.21□□□□□ -1.74
SSU72-204ENST00000378726 KRTAP5-7Q6L8G8 165 aa4.11□□□□□ -1.75
SSU72-204ENST00000378726 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.93□□□□□ -1.78
SSU72-204ENST00000378726 GPR98Q8WXG9 6306 aa3.87□□□□□ -1.79
SSU72-204ENST00000378726 KRTAP9-9Q9BYP9 154 aa3.79□□□□□ -1.8
SSU72-204ENST00000378726 KRTAP21-2Q3LI59 83 aa3.78□□□□□ -1.8
SSU72-204ENST00000378726 MUC5BQ9HC84 5762 aaPredicted RBP3.7□□□□□ -1.82
SSU72-204ENST00000378726 KRTAP5-11Q6L8G4 156 aa3.67□□□□□ -1.82
SSU72-204ENST00000378726 KRTAP4-12Q9BQ66 201 aa3.51□□□□□ -1.85
SSU72-204ENST00000378726 KRTAP4-4Q9BYR3 166 aa3.4□□□□□ -1.86
SSU72-204ENST00000378726 KRTAP21-1Q3LI58 79 aa3.29□□□□□ -1.88
SSU72-204ENST00000378726 LCE1FQ5T754 118 aa3.24□□□□□ -1.89
SSU72-204ENST00000378726 AHNAKQ09666 5890 aaKnown RBP3.21□□□□□ -1.9
SSU72-204ENST00000378726 PHGR1C9JFL3 82 aa3.16□□□□□ -1.9
SSU72-204ENST00000378726 MUC19Q7Z5P9 8384 aa3.07□□□□□ -1.92
SSU72-204ENST00000378726 MUC16Q8WXI7 14507 aa2.08□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 33.8 ms