RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 MT1GP13640 62 aa4.88□□□□□ -1.63
SHROOM1-203ENST00000378679 KRTAP9-2Q9BYQ4 174 aa4.86□□□□□ -1.63
SHROOM1-203ENST00000378679 KRTAP4-7Q9BYR0 210 aa4.86□□□□□ -1.63
SHROOM1-203ENST00000378679 MT1EP04732 61 aa4.84□□□□□ -1.63
SHROOM1-203ENST00000378679 MT1LQ93083 61 aa4.82□□□□□ -1.64
SHROOM1-203ENST00000378679 KRTAP19-3Q7Z4W3 81 aa4.79□□□□□ -1.64
SHROOM1-203ENST00000378679 FCGBPQ9Y6R7 5405 aaPredicted RBP4.78□□□□□ -1.64
SHROOM1-203ENST00000378679 KRTAP19-7Q3SYF9 63 aa4.73□□□□□ -1.65
SHROOM1-203ENST00000378679 SPRR2DP22532 72 aa4.7□□□□□ -1.66
SHROOM1-203ENST00000378679 KRTAP12-4P60329 112 aa4.66□□□□□ -1.66
SHROOM1-203ENST00000378679 LCE3BQ5TA77 95 aa4.64□□□□□ -1.67
SHROOM1-203ENST00000378679 MUC12Q9UKN1 5478 aa4.63□□□□□ -1.67
SHROOM1-203ENST00000378679 MT1MQ8N339 61 aa4.63□□□□□ -1.67
SHROOM1-203ENST00000378679 KRTAP4-3Q9BYR4 195 aa4.6□□□□□ -1.67
SHROOM1-203ENST00000378679 SSPOA2VEC9 5147 aa4.53□□□□□ -1.68
SHROOM1-203ENST00000378679 LOC100996750A0A140TA64 210 aa4.52□□□□□ -1.69
SHROOM1-203ENST00000378679 KRTAP9-6A8MVA2 160 aa4.5□□□□□ -1.69
SHROOM1-203ENST00000378679 SYNE2Q8WXH0 6885 aaKnown RBP4.5□□□□□ -1.69
SHROOM1-203ENST00000378679 KRTAP9-6A0A140TA67 174 aa4.48□□□□□ -1.69
SHROOM1-203ENST00000378679 MACF1Q9UPN3 7388 aaKnown RBP4.35□□□□□ -1.71
SHROOM1-203ENST00000378679 LCE3DQ9BYE3 92 aa4.32□□□□□ -1.72
SHROOM1-203ENST00000378679 KRTAP4-9Q9BYQ8 210 aa4.29□□□□□ -1.72
SHROOM1-203ENST00000378679 LCE5AQ5TCM9 118 aa4.29□□□□□ -1.72
SHROOM1-203ENST00000378679 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.26□□□□□ -1.73
SHROOM1-203ENST00000378679 LCE1AQ5T7P2 110 aa4.25□□□□□ -1.73
SHROOM1-203ENST00000378679 KRTAP6-3Q3LI67 103 aa4.24□□□□□ -1.73
SHROOM1-203ENST00000378679 KRTAP9-7A8MTY7 169 aa4.23□□□□□ -1.73
SHROOM1-203ENST00000378679 KRTAP2-3P0C7H8 128 aa4.22□□□□□ -1.73
SHROOM1-203ENST00000378679 LCE3EQ5T5B0 92 aa4.22□□□□□ -1.73
SHROOM1-203ENST00000378679 KRTAP2-4Q9BYR9 128 aa4.22□□□□□ -1.73
SHROOM1-203ENST00000378679 KRTAP2-1Q9BYU5 128 aa4.22□□□□□ -1.73
SHROOM1-203ENST00000378679 MT4P47944 62 aa4.21□□□□□ -1.74
SHROOM1-203ENST00000378679 MT1AP04731 61 aa4.19□□□□□ -1.74
SHROOM1-203ENST00000378679 MT3P25713 68 aa4.16□□□□□ -1.74
SHROOM1-203ENST00000378679 PRM1P04553 51 aa4.13□□□□□ -1.75
SHROOM1-203ENST00000378679 MDN1Q9NU22 5596 aa4.12□□□□□ -1.75
SHROOM1-203ENST00000378679 KRTAP6-1Q3LI64 71 aa4.07□□□□□ -1.76
SHROOM1-203ENST00000378679 KRTAP5-9P26371 169 aa3.98□□□□□ -1.77
SHROOM1-203ENST00000378679 KRTAP20-1Q3LI63 56 aa3.94□□□□□ -1.78
SHROOM1-203ENST00000378679 KRTAP6-2Q3LI66 62 aa3.9□□□□□ -1.78
SHROOM1-203ENST00000378679 KRTAP9-4Q9BYQ2 154 aa3.88□□□□□ -1.79
SHROOM1-203ENST00000378679 KRTAP2-2Q9BYT5 123 aa3.86□□□□□ -1.79
SHROOM1-203ENST00000378679 LCE1DQ5T752 114 aa3.85□□□□□ -1.79
SHROOM1-203ENST00000378679 LCE4AQ5TA78 99 aa3.8□□□□□ -1.8
SHROOM1-203ENST00000378679 LCE1BQ5T7P3 118 aa3.8□□□□□ -1.8
SHROOM1-203ENST00000378679 NEBP20929 6669 aa3.77□□□□□ -1.81
SHROOM1-203ENST00000378679 KRTAP4-6Q9BYQ5 205 aa3.75□□□□□ -1.81
SHROOM1-203ENST00000378679 MUC19Q7Z5P9 8384 aa3.75□□□□□ -1.81
SHROOM1-203ENST00000378679 LCE1EQ5T753 118 aa3.64□□□□□ -1.83
SHROOM1-203ENST00000378679 KRTAP20-2Q3LI61 65 aa3.47□□□□□ -1.85
SHROOM1-203ENST00000378679 KRTAP5-5Q701N2 237 aaPredicted RBP3.43□□□□□ -1.86
SHROOM1-203ENST00000378679 KRTAP4-12Q9BQ66 201 aa3.33□□□□□ -1.88
SHROOM1-203ENST00000378679 GPR98Q8WXG9 6306 aa3.31□□□□□ -1.88
SHROOM1-203ENST00000378679 KRTAP5-4Q6L8H1 288 aa3.22□□□□□ -1.89
SHROOM1-203ENST00000378679 KRTAP9-9Q9BYP9 154 aa3.22□□□□□ -1.89
SHROOM1-203ENST00000378679 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
SHROOM1-203ENST00000378679 KRTAP4-11Q9BYQ6 195 aa3.17□□□□□ -1.9
SHROOM1-203ENST00000378679 MUC5ACP98088 5654 aa3.16□□□□□ -1.9
SHROOM1-203ENST00000378679 HMCN1Q96RW7 5635 aa3.12□□□□□ -1.91
SHROOM1-203ENST00000378679 LCE1CQ5T751 118 aa3.02□□□□□ -1.93
SHROOM1-203ENST00000378679 KRTAP5-3Q6L8H2 238 aa2.92□□□□□ -1.94
SHROOM1-203ENST00000378679 AHNAK2Q8IVF2 5795 aa2.88□□□□□ -1.95
SHROOM1-203ENST00000378679 KRTAP5-2Q701N4 177 aa2.88□□□□□ -1.95
SHROOM1-203ENST00000378679 KRTAP4-4Q9BYR3 166 aa2.84□□□□□ -1.96
SHROOM1-203ENST00000378679 KRTAP4-2Q9BYR5 136 aa2.84□□□□□ -1.96
SHROOM1-203ENST00000378679 KRTAP5-8O75690 187 aa2.69□□□□□ -1.98
SHROOM1-203ENST00000378679 MUC5BQ9HC84 5762 aaPredicted RBP2.59□□□□□ -1.99
SHROOM1-203ENST00000378679 KRTAP5-10Q6L8G5 202 aa2.54□□□□□ -2
SHROOM1-203ENST00000378679 KRTAP5-1Q6L8H4 278 aa2.54□□□□□ -2
SHROOM1-203ENST00000378679 KRTAP5-7Q6L8G8 165 aa2.5□□□□□ -2.01
SHROOM1-203ENST00000378679 AHNAKQ09666 5890 aaKnown RBP2.41□□□□□ -2.02
SHROOM1-203ENST00000378679 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
SHROOM1-203ENST00000378679 KRTAP21-2Q3LI59 83 aa2.33□□□□□ -2.04
SHROOM1-203ENST00000378679 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.24□□□□□ -2.05
SHROOM1-203ENST00000378679 KRTAP21-1Q3LI58 79 aa2.01□□□□□ -2.09
SHROOM1-203ENST00000378679 PHGR1C9JFL3 82 aa2□□□□□ -2.09
SHROOM1-203ENST00000378679 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 107.3 ms