RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 LCE5AQ5TCM9 118 aa4.86□□□□□ -1.63
VPS28-202ENST00000377348 LCE3BQ5TA77 95 aa4.84□□□□□ -1.63
VPS28-202ENST00000377348 KRTAP2-2Q9BYT5 123 aa4.84□□□□□ -1.63
VPS28-202ENST00000377348 KRTAP2-1Q9BYU5 128 aa4.84□□□□□ -1.63
VPS28-202ENST00000377348 MT1LQ93083 61 aa4.78□□□□□ -1.64
VPS28-202ENST00000377348 MT1GP13640 62 aa4.77□□□□□ -1.65
VPS28-202ENST00000377348 KRTAP25-1Q3LHN0 102 aa4.77□□□□□ -1.65
VPS28-202ENST00000377348 PRO0628Q9UI54 55 aa4.74□□□□□ -1.65
VPS28-202ENST00000377348 DSTQ03001 7570 aaKnown RBP4.73□□□□□ -1.65
VPS28-202ENST00000377348 KRTAP12-3P60328 96 aa4.72□□□□□ -1.65
VPS28-202ENST00000377348 ROMO1P60602 79 aa4.71□□□□□ -1.66
VPS28-202ENST00000377348 PP632Q6XCG6 107 aa4.71□□□□□ -1.66
VPS28-202ENST00000377348 MT1MQ8N339 61 aa4.71□□□□□ -1.66
VPS28-202ENST00000377348 PMAIP1Q13794 54 aa4.64□□□□□ -1.67
VPS28-202ENST00000377348 KRTAP4-3Q9BYR4 195 aa4.63□□□□□ -1.67
VPS28-202ENST00000377348 KRTAP4-7Q9BYR0 210 aa4.6□□□□□ -1.67
VPS28-202ENST00000377348 KRTAP23-1A1A580 65 aa4.58□□□□□ -1.68
VPS28-202ENST00000377348 KRTAP4-9Q9BYQ8 210 aa4.49□□□□□ -1.69
VPS28-202ENST00000377348 KRTAP15-1Q3LI76 137 aa4.46□□□□□ -1.7
VPS28-202ENST00000377348 PRAC1Q96KF2 57 aa4.44□□□□□ -1.7
VPS28-202ENST00000377348 KTN1-AS1Q86SY8 53 aa4.42□□□□□ -1.7
VPS28-202ENST00000377348 LCE4AQ5TA78 99 aa4.41□□□□□ -1.7
VPS28-202ENST00000377348 LCE1DQ5T752 114 aa4.39□□□□□ -1.71
VPS28-202ENST00000377348 KRTAP19-4Q3LI73 84 aa4.38□□□□□ -1.71
VPS28-202ENST00000377348 MT4P47944 62 aa4.37□□□□□ -1.71
VPS28-202ENST00000377348 KRTAP5-4Q6L8H1 288 aa4.37□□□□□ -1.71
VPS28-202ENST00000377348 HMCN1Q96RW7 5635 aa4.37□□□□□ -1.71
VPS28-202ENST00000377348 LCE3CQ5T5A8 94 aa4.36□□□□□ -1.71
VPS28-202ENST00000377348 LOC100996750A0A140TA64 210 aa4.34□□□□□ -1.71
VPS28-202ENST00000377348 KRTAP5-5Q701N2 237 aaPredicted RBP4.3□□□□□ -1.72
VPS28-202ENST00000377348 KRTAP4-6Q9BYQ5 205 aa4.27□□□□□ -1.73
VPS28-202ENST00000377348 SYNE1Q8NF91 8797 aaKnown RBP4.22□□□□□ -1.73
VPS28-202ENST00000377348 GPR98Q8WXG9 6306 aa4.22□□□□□ -1.73
VPS28-202ENST00000377348 KRTAP9-6A8MVA2 160 aa4.15□□□□□ -1.75
VPS28-202ENST00000377348 KRTAP20-2Q3LI61 65 aa4.13□□□□□ -1.75
VPS28-202ENST00000377348 KRTAP12-4P60329 112 aa4.11□□□□□ -1.75
VPS28-202ENST00000377348 AHNAK2Q8IVF2 5795 aa4.1□□□□□ -1.75
VPS28-202ENST00000377348 SPRR5A0A1B0GTR4 108 aa4.09□□□□□ -1.75
VPS28-202ENST00000377348 MT1AP04731 61 aa4.05□□□□□ -1.76
VPS28-202ENST00000377348 KRTAP6-1Q3LI64 71 aa4.05□□□□□ -1.76
VPS28-202ENST00000377348 KRTAP5-3Q6L8H2 238 aa3.99□□□□□ -1.77
VPS28-202ENST00000377348 KRTAP5-10Q6L8G5 202 aa3.97□□□□□ -1.77
VPS28-202ENST00000377348 KRTAP9-4Q9BYQ2 154 aa3.89□□□□□ -1.79
VPS28-202ENST00000377348 KRTAP5-2Q701N4 177 aa3.86□□□□□ -1.79
VPS28-202ENST00000377348 KRTAP6-2Q3LI66 62 aa3.82□□□□□ -1.8
VPS28-202ENST00000377348 KRTAP5-7Q6L8G8 165 aa3.77□□□□□ -1.81
VPS28-202ENST00000377348 KRTAP4-11Q9BYQ6 195 aa3.71□□□□□ -1.82
VPS28-202ENST00000377348 MT3P25713 68 aa3.69□□□□□ -1.82
VPS28-202ENST00000377348 OBSCNQ5VST9 7968 aa3.63□□□□□ -1.83
VPS28-202ENST00000377348 H3BS24 57 aa3.61□□□□□ -1.83
VPS28-202ENST00000377348 KRTAP5-8O75690 187 aa3.6□□□□□ -1.83
VPS28-202ENST00000377348 LUZP6Q538Z0 58 aa3.53□□□□□ -1.84
VPS28-202ENST00000377348 A0A0A0MQY5 61 aa3.46□□□□□ -1.86
VPS28-202ENST00000377348 KRTAP5-1Q6L8H4 278 aa3.44□□□□□ -1.86
VPS28-202ENST00000377348 MUC5ACP98088 5654 aa3.41□□□□□ -1.86
VPS28-202ENST00000377348 MUC5BQ9HC84 5762 aaPredicted RBP3.39□□□□□ -1.87
VPS28-202ENST00000377348 NDUFAF8A1L188 74 aa3.38□□□□□ -1.87
VPS28-202ENST00000377348 KRTAP9-9Q9BYP9 154 aa3.35□□□□□ -1.87
VPS28-202ENST00000377348 LCE1EQ5T753 118 aa3.32□□□□□ -1.88
VPS28-202ENST00000377348 AHNAKQ09666 5890 aaKnown RBP3.3□□□□□ -1.88
VPS28-202ENST00000377348 LCE3DQ9BYE3 92 aa3.18□□□□□ -1.9
VPS28-202ENST00000377348 LCE1BQ5T7P3 118 aa3.17□□□□□ -1.9
VPS28-202ENST00000377348 KRTAP4-2Q9BYR5 136 aa3.16□□□□□ -1.9
VPS28-202ENST00000377348 LCE1CQ5T751 118 aa3.1□□□□□ -1.91
VPS28-202ENST00000377348 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
VPS28-202ENST00000377348 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.84□□□□□ -1.95
VPS28-202ENST00000377348 KRTAP4-12Q9BQ66 201 aa2.83□□□□□ -1.96
VPS28-202ENST00000377348 KRTAP5-11Q6L8G4 156 aa2.79□□□□□ -1.96
VPS28-202ENST00000377348 INE1O15225 51 aa2.75□□□□□ -1.97
VPS28-202ENST00000377348 KRTAP21-2Q3LI59 83 aa2.65□□□□□ -1.99
VPS28-202ENST00000377348 LCE1FQ5T754 118 aa2.64□□□□□ -1.99
VPS28-202ENST00000377348 PRM1P04553 51 aa2.46□□□□□ -2.02
VPS28-202ENST00000377348 KRTAP4-4Q9BYR3 166 aa2.44□□□□□ -2.02
VPS28-202ENST00000377348 PHGR1C9JFL3 82 aa2.4□□□□□ -2.03
VPS28-202ENST00000377348 MUC19Q7Z5P9 8384 aa2.23□□□□□ -2.05
VPS28-202ENST00000377348 KRTAP21-1Q3LI58 79 aa1.73□□□□□ -2.13
VPS28-202ENST00000377348 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 128.3 ms