RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 LOC100996750A0A140TA64 210 aa4.23□□□□□ -1.73
GPC6-201ENST00000377047 MT3P25713 68 aa4.23□□□□□ -1.73
GPC6-201ENST00000377047 KRTAP4-3Q9BYR4 195 aa4.21□□□□□ -1.74
GPC6-201ENST00000377047 EPPK1P58107 5090 aaKnown RBP4.16□□□□□ -1.74
GPC6-201ENST00000377047 LCE2AQ5TA79 106 aaPredicted RBP4.15□□□□□ -1.74
GPC6-201ENST00000377047 LCE1BQ5T7P3 118 aa4.13□□□□□ -1.75
GPC6-201ENST00000377047 LCE1DQ5T752 114 aa4.12□□□□□ -1.75
GPC6-201ENST00000377047 ABCA13Q86UQ4 5058 aa4.07□□□□□ -1.76
GPC6-201ENST00000377047 KRTAP20-1Q3LI63 56 aa4.05□□□□□ -1.76
GPC6-201ENST00000377047 PRM1P04553 51 aa4.03□□□□□ -1.76
GPC6-201ENST00000377047 KRTAP19-7Q3SYF9 63 aa4.01□□□□□ -1.77
GPC6-201ENST00000377047 KRTAP9-7A8MTY7 169 aa3.99□□□□□ -1.77
GPC6-201ENST00000377047 FAT4Q6V0I7 4981 aa3.99□□□□□ -1.77
GPC6-201ENST00000377047 MT1AP04731 61 aa3.97□□□□□ -1.77
GPC6-201ENST00000377047 FSIP2Q5CZC0 6907 aa3.95□□□□□ -1.78
GPC6-201ENST00000377047 RNF213Q63HN8 5207 aa3.93□□□□□ -1.78
GPC6-201ENST00000377047 HMCN2Q8NDA2 5059 aa3.91□□□□□ -1.78
GPC6-201ENST00000377047 LCE5AQ5TCM9 118 aa3.9□□□□□ -1.79
GPC6-201ENST00000377047 KRTAP6-3Q3LI67 103 aa3.89□□□□□ -1.79
GPC6-201ENST00000377047 KRTAP4-9Q9BYQ8 210 aa3.89□□□□□ -1.79
GPC6-201ENST00000377047 KRTAP2-3P0C7H8 128 aa3.87□□□□□ -1.79
GPC6-201ENST00000377047 KRTAP2-4Q9BYR9 128 aa3.87□□□□□ -1.79
GPC6-201ENST00000377047 KRTAP2-1Q9BYU5 128 aa3.87□□□□□ -1.79
GPC6-201ENST00000377047 UBR4Q5T4S7 5183 aa3.84□□□□□ -1.8
GPC6-201ENST00000377047 SYNE2Q8WXH0 6885 aaKnown RBP3.83□□□□□ -1.8
GPC6-201ENST00000377047 LCE1AQ5T7P2 110 aa3.83□□□□□ -1.8
GPC6-201ENST00000377047 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.83□□□□□ -1.8
GPC6-201ENST00000377047 SYNE1Q8NF91 8797 aaKnown RBP3.79□□□□□ -1.8
GPC6-201ENST00000377047 MUC2Q02817 5179 aa3.76□□□□□ -1.81
GPC6-201ENST00000377047 KRTAP6-2Q3LI66 62 aa3.75□□□□□ -1.81
GPC6-201ENST00000377047 KRTAP6-1Q3LI64 71 aa3.74□□□□□ -1.81
GPC6-201ENST00000377047 LCE4AQ5TA78 99 aa3.73□□□□□ -1.81
GPC6-201ENST00000377047 KRTAP2-2Q9BYT5 123 aa3.71□□□□□ -1.82
GPC6-201ENST00000377047 KRTAP9-4Q9BYQ2 154 aa3.7□□□□□ -1.82
GPC6-201ENST00000377047 KRTAP9-6A8MVA2 160 aa3.6□□□□□ -1.83
GPC6-201ENST00000377047 LCE1CQ5T751 118 aa3.57□□□□□ -1.84
GPC6-201ENST00000377047 LCE1EQ5T753 118 aa3.57□□□□□ -1.84
GPC6-201ENST00000377047 LCE1FQ5T754 118 aa3.57□□□□□ -1.84
GPC6-201ENST00000377047 OBSCNQ5VST9 7968 aa3.5□□□□□ -1.85
GPC6-201ENST00000377047 KRTAP9-9Q9BYP9 154 aa3.33□□□□□ -1.88
GPC6-201ENST00000377047 USH2AO75445 5202 aa3.23□□□□□ -1.89
GPC6-201ENST00000377047 KRTAP5-9P26371 169 aa3.22□□□□□ -1.89
GPC6-201ENST00000377047 MACF1Q9UPN3 7388 aaKnown RBP3.2□□□□□ -1.9
GPC6-201ENST00000377047 KRTAP4-6Q9BYQ5 205 aa3.18□□□□□ -1.9
GPC6-201ENST00000377047 FCGBPQ9Y6R7 5405 aaPredicted RBP3.18□□□□□ -1.9
GPC6-201ENST00000377047 NEBP20929 6669 aa3.17□□□□□ -1.9
GPC6-201ENST00000377047 KMT2DO14686 5537 aa3.15□□□□□ -1.91
GPC6-201ENST00000377047 DSTQ03001 7570 aaKnown RBP3.13□□□□□ -1.91
GPC6-201ENST00000377047 GPR98Q8WXG9 6306 aa3.11□□□□□ -1.91
GPC6-201ENST00000377047 KRTAP20-2Q3LI61 65 aa3.11□□□□□ -1.91
GPC6-201ENST00000377047 SSPOA2VEC9 5147 aa3.07□□□□□ -1.92
GPC6-201ENST00000377047 KRTAP4-11Q9BYQ6 195 aa3□□□□□ -1.93
GPC6-201ENST00000377047 KRTAP5-4Q6L8H1 288 aa2.89□□□□□ -1.95
GPC6-201ENST00000377047 KRTAP4-12Q9BQ66 201 aa2.89□□□□□ -1.95
GPC6-201ENST00000377047 KRTAP4-2Q9BYR5 136 aa2.89□□□□□ -1.95
GPC6-201ENST00000377047 KRTAP4-4Q9BYR3 166 aa2.88□□□□□ -1.95
GPC6-201ENST00000377047 MDN1Q9NU22 5596 aa2.88□□□□□ -1.95
GPC6-201ENST00000377047 MUC12Q9UKN1 5478 aa2.85□□□□□ -1.95
GPC6-201ENST00000377047 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
GPC6-201ENST00000377047 KRTAP5-5Q701N2 237 aaPredicted RBP2.64□□□□□ -1.99
GPC6-201ENST00000377047 KRTAP5-3Q6L8H2 238 aa2.54□□□□□ -2
GPC6-201ENST00000377047 AHNAK2Q8IVF2 5795 aa2.42□□□□□ -2.02
GPC6-201ENST00000377047 MUC5ACP98088 5654 aa2.38□□□□□ -2.03
GPC6-201ENST00000377047 KRTAP5-8O75690 187 aa2.35□□□□□ -2.03
GPC6-201ENST00000377047 HMCN1Q96RW7 5635 aa2.24□□□□□ -2.05
GPC6-201ENST00000377047 PHGR1C9JFL3 82 aa2.2□□□□□ -2.06
GPC6-201ENST00000377047 KRTAP5-2Q701N4 177 aa2.16□□□□□ -2.06
GPC6-201ENST00000377047 KRTAP5-10Q6L8G5 202 aa2.13□□□□□ -2.07
GPC6-201ENST00000377047 MUC5BQ9HC84 5762 aaPredicted RBP2.03□□□□□ -2.09
GPC6-201ENST00000377047 KRTAP5-11Q6L8G4 156 aa1.97□□□□□ -2.09
GPC6-201ENST00000377047 KRTAP5-1Q6L8H4 278 aa1.95□□□□□ -2.1
GPC6-201ENST00000377047 AHNAKQ09666 5890 aaKnown RBP1.94□□□□□ -2.1
GPC6-201ENST00000377047 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.11
GPC6-201ENST00000377047 KRTAP5-7Q6L8G8 165 aa1.66□□□□□ -2.14
GPC6-201ENST00000377047 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
GPC6-201ENST00000377047 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
GPC6-201ENST00000377047 MUC16Q8WXI7 14507 aa1.26□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 29 ms