RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 KRTAP19-5Q3LI72 72 aa5.77□□□□□ -1.49
CCDC40-202ENST00000374876 A0A0A0MQY5 61 aa5.76□□□□□ -1.49
CCDC40-202ENST00000374876 NEBP20929 6669 aa5.71□□□□□ -1.5
CCDC40-202ENST00000374876 MDN1Q9NU22 5596 aa5.7□□□□□ -1.5
CCDC40-202ENST00000374876 SPRR2EP22531 72 aa5.65□□□□□ -1.51
CCDC40-202ENST00000374876 SPRR2BP35325 72 aa5.65□□□□□ -1.51
CCDC40-202ENST00000374876 SPRR2AP35326 72 aa5.65□□□□□ -1.51
CCDC40-202ENST00000374876 LCE3CQ5T5A8 94 aa5.61□□□□□ -1.51
CCDC40-202ENST00000374876 LCE1AQ5T7P2 110 aa5.61□□□□□ -1.51
CCDC40-202ENST00000374876 KRTAP19-7Q3SYF9 63 aa5.58□□□□□ -1.52
CCDC40-202ENST00000374876 MT1EP04732 61 aa5.5□□□□□ -1.53
CCDC40-202ENST00000374876 KRTAP20-1Q3LI63 56 aa5.45□□□□□ -1.54
CCDC40-202ENST00000374876 SPRR2DP22532 72 aa5.45□□□□□ -1.54
CCDC40-202ENST00000374876 KRTAP19-4Q3LI73 84 aa5.41□□□□□ -1.54
CCDC40-202ENST00000374876 KRTAP2-3P0C7H8 128 aa5.39□□□□□ -1.55
CCDC40-202ENST00000374876 KRTAP19-3Q7Z4W3 81 aa5.39□□□□□ -1.55
CCDC40-202ENST00000374876 KRTAP2-4Q9BYR9 128 aa5.39□□□□□ -1.55
CCDC40-202ENST00000374876 MT1LQ93083 61 aa5.38□□□□□ -1.55
CCDC40-202ENST00000374876 LCE5AQ5TCM9 118 aa5.37□□□□□ -1.55
CCDC40-202ENST00000374876 KRTAP4-7Q9BYR0 210 aa5.36□□□□□ -1.55
CCDC40-202ENST00000374876 KRTAP9-6A8MVA2 160 aa5.35□□□□□ -1.55
CCDC40-202ENST00000374876 MT1GP13640 62 aa5.29□□□□□ -1.56
CCDC40-202ENST00000374876 LCE3BQ5TA77 95 aa5.28□□□□□ -1.56
CCDC40-202ENST00000374876 INE1O15225 51 aa5.25□□□□□ -1.57
CCDC40-202ENST00000374876 KRTAP2-2Q9BYT5 123 aa5.24□□□□□ -1.57
CCDC40-202ENST00000374876 KRTAP2-1Q9BYU5 128 aa5.24□□□□□ -1.57
CCDC40-202ENST00000374876 MT1MQ8N339 61 aa5.22□□□□□ -1.57
CCDC40-202ENST00000374876 DSTQ03001 7570 aaKnown RBP5.21□□□□□ -1.58
CCDC40-202ENST00000374876 KRTAP4-3Q9BYR4 195 aa5.15□□□□□ -1.58
CCDC40-202ENST00000374876 LOC100996750A0A140TA64 210 aa5.01□□□□□ -1.61
CCDC40-202ENST00000374876 KRTAP4-9Q9BYQ8 210 aa4.89□□□□□ -1.63
CCDC40-202ENST00000374876 LCE4AQ5TA78 99 aa4.8□□□□□ -1.64
CCDC40-202ENST00000374876 KRTAP5-4Q6L8H1 288 aa4.78□□□□□ -1.64
CCDC40-202ENST00000374876 MT4P47944 62 aa4.77□□□□□ -1.65
CCDC40-202ENST00000374876 LCE1DQ5T752 114 aa4.77□□□□□ -1.65
CCDC40-202ENST00000374876 KRTAP5-5Q701N2 237 aaPredicted RBP4.75□□□□□ -1.65
CCDC40-202ENST00000374876 KRTAP4-6Q9BYQ5 205 aa4.68□□□□□ -1.66
CCDC40-202ENST00000374876 HMCN1Q96RW7 5635 aa4.63□□□□□ -1.67
CCDC40-202ENST00000374876 KRTAP6-1Q3LI64 71 aa4.55□□□□□ -1.68
CCDC40-202ENST00000374876 KRTAP12-4P60329 112 aa4.55□□□□□ -1.68
CCDC40-202ENST00000374876 MT1AP04731 61 aa4.54□□□□□ -1.68
CCDC40-202ENST00000374876 SYNE1Q8NF91 8797 aaKnown RBP4.53□□□□□ -1.68
CCDC40-202ENST00000374876 KRTAP20-2Q3LI61 65 aa4.51□□□□□ -1.69
CCDC40-202ENST00000374876 KRTAP5-3Q6L8H2 238 aa4.36□□□□□ -1.71
CCDC40-202ENST00000374876 KRTAP9-4Q9BYQ2 154 aa4.34□□□□□ -1.71
CCDC40-202ENST00000374876 AHNAK2Q8IVF2 5795 aa4.32□□□□□ -1.72
CCDC40-202ENST00000374876 GPR98Q8WXG9 6306 aa4.31□□□□□ -1.72
CCDC40-202ENST00000374876 LCE3DQ9BYE3 92 aa4.31□□□□□ -1.72
CCDC40-202ENST00000374876 KRTAP5-10Q6L8G5 202 aa4.25□□□□□ -1.73
CCDC40-202ENST00000374876 KRTAP6-2Q3LI66 62 aa4.24□□□□□ -1.73
CCDC40-202ENST00000374876 KRTAP5-2Q701N4 177 aa4.23□□□□□ -1.73
CCDC40-202ENST00000374876 LCE3EQ5T5B0 92 aa4.22□□□□□ -1.73
CCDC40-202ENST00000374876 KRTAP4-12Q9BQ66 201 aa4.17□□□□□ -1.74
CCDC40-202ENST00000374876 MT3P25713 68 aa4.11□□□□□ -1.75
CCDC40-202ENST00000374876 KRTAP4-11Q9BYQ6 195 aa4.04□□□□□ -1.76
CCDC40-202ENST00000374876 KRTAP5-7Q6L8G8 165 aa4.02□□□□□ -1.77
CCDC40-202ENST00000374876 OBSCNQ5VST9 7968 aa4.01□□□□□ -1.77
CCDC40-202ENST00000374876 KRTAP9-9Q9BYP9 154 aa4□□□□□ -1.77
CCDC40-202ENST00000374876 PRM1P04553 51 aa3.95□□□□□ -1.78
CCDC40-202ENST00000374876 KRTAP5-8O75690 187 aa3.9□□□□□ -1.78
CCDC40-202ENST00000374876 KRTAP5-1Q6L8H4 278 aa3.77□□□□□ -1.81
CCDC40-202ENST00000374876 LCE1EQ5T753 118 aa3.68□□□□□ -1.82
CCDC40-202ENST00000374876 MUC5ACP98088 5654 aa3.61□□□□□ -1.83
CCDC40-202ENST00000374876 KRTAP4-2Q9BYR5 136 aa3.58□□□□□ -1.84
CCDC40-202ENST00000374876 MUC5BQ9HC84 5762 aaPredicted RBP3.53□□□□□ -1.84
CCDC40-202ENST00000374876 LCE1BQ5T7P3 118 aa3.51□□□□□ -1.85
CCDC40-202ENST00000374876 LCE1CQ5T751 118 aa3.43□□□□□ -1.86
CCDC40-202ENST00000374876 AHNAKQ09666 5890 aaKnown RBP3.42□□□□□ -1.86
CCDC40-202ENST00000374876 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.14□□□□□ -1.91
CCDC40-202ENST00000374876 KRTAP5-11Q6L8G4 156 aa3.06□□□□□ -1.92
CCDC40-202ENST00000374876 KRTAP21-2Q3LI59 83 aa2.95□□□□□ -1.94
CCDC40-202ENST00000374876 LCE1FQ5T754 118 aa2.9□□□□□ -1.95
CCDC40-202ENST00000374876 KRTAP4-4Q9BYR3 166 aa2.71□□□□□ -1.98
CCDC40-202ENST00000374876 PHGR1C9JFL3 82 aa2.65□□□□□ -1.99
CCDC40-202ENST00000374876 KRTAP21-1Q3LI58 79 aa2.46□□□□□ -2.02
CCDC40-202ENST00000374876 MUC19Q7Z5P9 8384 aa2.44□□□□□ -2.02
CCDC40-202ENST00000374876 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 355.7 ms