RNA–Protein interactions for RNA: ENST00000374199.8

PRPF4-202, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRPF4, Length 3,212 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-202ENST00000374199 KRTAP5-9P26371 169 aa4.3□□□□□ -1.72
PRPF4-202ENST00000374199 MACF1Q9UPN3 7388 aaKnown RBP4.29□□□□□ -1.72
PRPF4-202ENST00000374199 KRTAP4-7Q9BYR0 210 aa4.27□□□□□ -1.73
PRPF4-202ENST00000374199 MT1GP13640 62 aa4.27□□□□□ -1.73
PRPF4-202ENST00000374199 LCE5AQ5TCM9 118 aa4.27□□□□□ -1.73
PRPF4-202ENST00000374199 MT1MQ8N339 61 aa4.25□□□□□ -1.73
PRPF4-202ENST00000374199 INE1O15225 51 aa4.21□□□□□ -1.74
PRPF4-202ENST00000374199 MUC12Q9UKN1 5478 aa4.2□□□□□ -1.74
PRPF4-202ENST00000374199 SPRR2FQ96RM1 72 aa4.16□□□□□ -1.74
PRPF4-202ENST00000374199 KRTAP2-3P0C7H8 128 aa4.14□□□□□ -1.75
PRPF4-202ENST00000374199 KRTAP2-4Q9BYR9 128 aa4.14□□□□□ -1.75
PRPF4-202ENST00000374199 KRTAP2-1Q9BYU5 128 aa4.14□□□□□ -1.75
PRPF4-202ENST00000374199 KRTAP4-3Q9BYR4 195 aa4.11□□□□□ -1.75
PRPF4-202ENST00000374199 LCE1AQ5T7P2 110 aa4.1□□□□□ -1.75
PRPF4-202ENST00000374199 SYNE2Q8WXH0 6885 aaKnown RBP4.1□□□□□ -1.75
PRPF4-202ENST00000374199 KRTAP6-3Q3LI67 103 aa4.04□□□□□ -1.76
PRPF4-202ENST00000374199 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.02□□□□□ -1.77
PRPF4-202ENST00000374199 MDN1Q9NU22 5596 aa4.02□□□□□ -1.77
PRPF4-202ENST00000374199 LOC100996750A0A140TA64 210 aa4.01□□□□□ -1.77
PRPF4-202ENST00000374199 KRTAP9-6A0A140TA67 174 aa4□□□□□ -1.77
PRPF4-202ENST00000374199 KRTAP5-5Q701N2 237 aaPredicted RBP3.96□□□□□ -1.78
PRPF4-202ENST00000374199 SPRR2EP22531 72 aa3.91□□□□□ -1.78
PRPF4-202ENST00000374199 SPRR2BP35325 72 aa3.91□□□□□ -1.78
PRPF4-202ENST00000374199 SPRR2AP35326 72 aa3.91□□□□□ -1.78
PRPF4-202ENST00000374199 MT1AP04731 61 aa3.8□□□□□ -1.8
PRPF4-202ENST00000374199 NEBP20929 6669 aa3.78□□□□□ -1.8
PRPF4-202ENST00000374199 SPRR2DP22532 72 aa3.76□□□□□ -1.81
PRPF4-202ENST00000374199 KRTAP6-1Q3LI64 71 aa3.74□□□□□ -1.81
PRPF4-202ENST00000374199 DSTQ03001 7570 aaKnown RBP3.74□□□□□ -1.81
PRPF4-202ENST00000374199 KRTAP5-4Q6L8H1 288 aa3.68□□□□□ -1.82
PRPF4-202ENST00000374199 KRTAP9-7A8MTY7 169 aa3.67□□□□□ -1.82
PRPF4-202ENST00000374199 LCE3BQ5TA77 95 aa3.63□□□□□ -1.83
PRPF4-202ENST00000374199 KRTAP9-4Q9BYQ2 154 aa3.61□□□□□ -1.83
PRPF4-202ENST00000374199 KRTAP12-4P60329 112 aa3.48□□□□□ -1.85
PRPF4-202ENST00000374199 SYNE1Q8NF91 8797 aaKnown RBP3.46□□□□□ -1.86
PRPF4-202ENST00000374199 LCE4AQ5TA78 99 aa3.45□□□□□ -1.86
PRPF4-202ENST00000374199 KRTAP4-9Q9BYQ8 210 aa3.42□□□□□ -1.86
PRPF4-202ENST00000374199 KRTAP5-2Q701N4 177 aa3.39□□□□□ -1.87
PRPF4-202ENST00000374199 KRTAP6-2Q3LI66 62 aa3.38□□□□□ -1.87
PRPF4-202ENST00000374199 KRTAP2-2Q9BYT5 123 aa3.38□□□□□ -1.87
PRPF4-202ENST00000374199 MT3P25713 68 aa3.37□□□□□ -1.87
PRPF4-202ENST00000374199 LCE3DQ9BYE3 92 aa3.34□□□□□ -1.87
PRPF4-202ENST00000374199 KRTAP20-2Q3LI61 65 aa3.32□□□□□ -1.88
PRPF4-202ENST00000374199 KRTAP4-6Q9BYQ5 205 aa3.32□□□□□ -1.88
PRPF4-202ENST00000374199 KRTAP20-1Q3LI63 56 aa3.29□□□□□ -1.88
PRPF4-202ENST00000374199 LCE3EQ5T5B0 92 aa3.29□□□□□ -1.88
PRPF4-202ENST00000374199 KRTAP5-3Q6L8H2 238 aa3.28□□□□□ -1.88
PRPF4-202ENST00000374199 HMCN1Q96RW7 5635 aa3.25□□□□□ -1.89
PRPF4-202ENST00000374199 LCE1DQ5T752 114 aa3.23□□□□□ -1.89
PRPF4-202ENST00000374199 MT4P47944 62 aa3.2□□□□□ -1.9
PRPF4-202ENST00000374199 OBSCNQ5VST9 7968 aa3.14□□□□□ -1.91
PRPF4-202ENST00000374199 PRM1P04553 51 aa3.11□□□□□ -1.91
PRPF4-202ENST00000374199 LCE1EQ5T753 118 aa3□□□□□ -1.93
PRPF4-202ENST00000374199 KRTAP9-9Q9BYP9 154 aa2.93□□□□□ -1.94
PRPF4-202ENST00000374199 KRTAP5-10Q6L8G5 202 aa2.9□□□□□ -1.95
PRPF4-202ENST00000374199 KRTAP5-1Q6L8H4 278 aa2.86□□□□□ -1.95
PRPF4-202ENST00000374199 KRTAP5-7Q6L8G8 165 aa2.83□□□□□ -1.96
PRPF4-202ENST00000374199 AHNAK2Q8IVF2 5795 aa2.82□□□□□ -1.96
PRPF4-202ENST00000374199 LCE1CQ5T751 118 aa2.81□□□□□ -1.96
PRPF4-202ENST00000374199 LCE1BQ5T7P3 118 aa2.81□□□□□ -1.96
PRPF4-202ENST00000374199 KRTAP4-11Q9BYQ6 195 aa2.8□□□□□ -1.96
PRPF4-202ENST00000374199 MUC5ACP98088 5654 aa2.8□□□□□ -1.96
PRPF4-202ENST00000374199 KRTAP4-2Q9BYR5 136 aa2.79□□□□□ -1.96
PRPF4-202ENST00000374199 KRTAP5-8O75690 187 aa2.78□□□□□ -1.96
PRPF4-202ENST00000374199 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.72□□□□□ -1.97
PRPF4-202ENST00000374199 KRTAP4-12Q9BQ66 201 aa2.66□□□□□ -1.98
PRPF4-202ENST00000374199 GPR98Q8WXG9 6306 aa2.55□□□□□ -2
PRPF4-202ENST00000374199 KRTAP21-2Q3LI59 83 aa2.52□□□□□ -2.01
PRPF4-202ENST00000374199 MUC19Q7Z5P9 8384 aa2.51□□□□□ -2.01
PRPF4-202ENST00000374199 KRTAP5-11Q6L8G4 156 aa2.46□□□□□ -2.02
PRPF4-202ENST00000374199 LCE1FQ5T754 118 aa2.46□□□□□ -2.02
PRPF4-202ENST00000374199 MUC5BQ9HC84 5762 aaPredicted RBP2.42□□□□□ -2.02
PRPF4-202ENST00000374199 AHNAKQ09666 5890 aaKnown RBP2.18□□□□□ -2.06
PRPF4-202ENST00000374199 PHGR1C9JFL3 82 aa2.11□□□□□ -2.07
PRPF4-202ENST00000374199 KRTAP4-4Q9BYR3 166 aa2.04□□□□□ -2.08
PRPF4-202ENST00000374199 KRTAP21-1Q3LI58 79 aa1.96□□□□□ -2.1
PRPF4-202ENST00000374199 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 9.3 ms