RNA–Protein interactions for RNA: ENST00000373548.7

HDAC1-201, Transcript of histone deacetylase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-201ENST00000373548 SYNE2Q8WXH0 6885 aaKnown RBP6.9□□□□□ -1.3
HDAC1-201ENST00000373548 KRTAP9-4Q9BYQ2 154 aa6.87□□□□□ -1.31
HDAC1-201ENST00000373548 KRTAP9-7A8MTY7 169 aa6.85□□□□□ -1.31
HDAC1-201ENST00000373548 KRTAP4-7Q9BYR0 210 aa6.83□□□□□ -1.32
HDAC1-201ENST00000373548 LCE4AQ5TA78 99 aa6.82□□□□□ -1.32
HDAC1-201ENST00000373548 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.75□□□□□ -1.33
HDAC1-201ENST00000373548 KRTAP9-9Q9BYP9 154 aa6.74□□□□□ -1.33
HDAC1-201ENST00000373548 KRTAP9-6A8MVA2 160 aa6.73□□□□□ -1.33
HDAC1-201ENST00000373548 LCE5AQ5TCM9 118 aa6.65□□□□□ -1.34
HDAC1-201ENST00000373548 KRTAP19-3Q7Z4W3 81 aa6.65□□□□□ -1.34
HDAC1-201ENST00000373548 MUC12Q9UKN1 5478 aa6.65□□□□□ -1.35
HDAC1-201ENST00000373548 SPRR2FQ96RM1 72 aa6.64□□□□□ -1.35
HDAC1-201ENST00000373548 MT1GP13640 62 aa6.6□□□□□ -1.35
HDAC1-201ENST00000373548 MT1MQ8N339 61 aa6.58□□□□□ -1.36
HDAC1-201ENST00000373548 KRTAP4-3Q9BYR4 195 aa6.55□□□□□ -1.36
HDAC1-201ENST00000373548 MDN1Q9NU22 5596 aa6.51□□□□□ -1.37
HDAC1-201ENST00000373548 KRTAP5-9P26371 169 aa6.45□□□□□ -1.38
HDAC1-201ENST00000373548 KRTAP6-3Q3LI67 103 aa6.44□□□□□ -1.38
HDAC1-201ENST00000373548 LOC100996750A0A140TA64 210 aa6.39□□□□□ -1.39
HDAC1-201ENST00000373548 KRTAP4-12Q9BQ66 201 aa6.32□□□□□ -1.4
HDAC1-201ENST00000373548 KRTAP2-3P0C7H8 128 aa6.31□□□□□ -1.4
HDAC1-201ENST00000373548 KRTAP2-4Q9BYR9 128 aa6.31□□□□□ -1.4
HDAC1-201ENST00000373548 KRTAP2-1Q9BYU5 128 aa6.31□□□□□ -1.4
HDAC1-201ENST00000373548 LCE1AQ5T7P2 110 aa6.3□□□□□ -1.4
HDAC1-201ENST00000373548 SPRR2EP22531 72 aa6.25□□□□□ -1.41
HDAC1-201ENST00000373548 SPRR2BP35325 72 aa6.25□□□□□ -1.41
HDAC1-201ENST00000373548 SPRR2AP35326 72 aa6.25□□□□□ -1.41
HDAC1-201ENST00000373548 DSTQ03001 7570 aaKnown RBP6.19□□□□□ -1.42
HDAC1-201ENST00000373548 NEBP20929 6669 aa6.14□□□□□ -1.43
HDAC1-201ENST00000373548 KRTAP4-6Q9BYQ5 205 aa6.1□□□□□ -1.43
HDAC1-201ENST00000373548 INE1O15225 51 aa6.04□□□□□ -1.44
HDAC1-201ENST00000373548 SPRR2DP22532 72 aa6.01□□□□□ -1.45
HDAC1-201ENST00000373548 LCE3BQ5TA77 95 aa5.9□□□□□ -1.46
HDAC1-201ENST00000373548 KRTAP5-5Q701N2 237 aaPredicted RBP5.9□□□□□ -1.47
HDAC1-201ENST00000373548 MT1AP04731 61 aa5.86□□□□□ -1.47
HDAC1-201ENST00000373548 KRTAP6-1Q3LI64 71 aa5.86□□□□□ -1.47
HDAC1-201ENST00000373548 KRTAP20-1Q3LI63 56 aa5.68□□□□□ -1.5
HDAC1-201ENST00000373548 LCE1FQ5T754 118 aa5.68□□□□□ -1.5
HDAC1-201ENST00000373548 MT3P25713 68 aa5.66□□□□□ -1.5
HDAC1-201ENST00000373548 SYNE1Q8NF91 8797 aaKnown RBP5.61□□□□□ -1.51
HDAC1-201ENST00000373548 KRTAP2-2Q9BYT5 123 aa5.56□□□□□ -1.52
HDAC1-201ENST00000373548 KRTAP4-9Q9BYQ8 210 aa5.55□□□□□ -1.52
HDAC1-201ENST00000373548 LCE1DQ5T752 114 aa5.5□□□□□ -1.53
HDAC1-201ENST00000373548 KRTAP5-4Q6L8H1 288 aa5.45□□□□□ -1.54
HDAC1-201ENST00000373548 KRTAP12-4P60329 112 aa5.42□□□□□ -1.54
HDAC1-201ENST00000373548 KRTAP6-2Q3LI66 62 aa5.33□□□□□ -1.56
HDAC1-201ENST00000373548 LCE3DQ9BYE3 92 aa5.32□□□□□ -1.56
HDAC1-201ENST00000373548 MT4P47944 62 aa5.3□□□□□ -1.56
HDAC1-201ENST00000373548 KRTAP4-11Q9BYQ6 195 aa5.22□□□□□ -1.57
HDAC1-201ENST00000373548 HMCN1Q96RW7 5635 aa5.21□□□□□ -1.58
HDAC1-201ENST00000373548 LCE3EQ5T5B0 92 aa5.21□□□□□ -1.58
HDAC1-201ENST00000373548 KRTAP20-2Q3LI61 65 aa5.1□□□□□ -1.59
HDAC1-201ENST00000373548 KRTAP5-2Q701N4 177 aa5.01□□□□□ -1.61
HDAC1-201ENST00000373548 OBSCNQ5VST9 7968 aa4.93□□□□□ -1.62
HDAC1-201ENST00000373548 KRTAP5-3Q6L8H2 238 aa4.9□□□□□ -1.63
HDAC1-201ENST00000373548 KRTAP4-2Q9BYR5 136 aa4.87□□□□□ -1.63
HDAC1-201ENST00000373548 PRM1P04553 51 aa4.73□□□□□ -1.65
HDAC1-201ENST00000373548 AHNAK2Q8IVF2 5795 aa4.67□□□□□ -1.66
HDAC1-201ENST00000373548 LCE1EQ5T753 118 aa4.48□□□□□ -1.69
HDAC1-201ENST00000373548 KRTAP5-10Q6L8G5 202 aa4.43□□□□□ -1.7
HDAC1-201ENST00000373548 GPR98Q8WXG9 6306 aa4.39□□□□□ -1.71
HDAC1-201ENST00000373548 MUC5ACP98088 5654 aa4.32□□□□□ -1.72
HDAC1-201ENST00000373548 KRTAP5-1Q6L8H4 278 aa4.3□□□□□ -1.72
HDAC1-201ENST00000373548 LCE1BQ5T7P3 118 aa4.28□□□□□ -1.72
HDAC1-201ENST00000373548 KRTAP5-8O75690 187 aa4.27□□□□□ -1.73
HDAC1-201ENST00000373548 LCE1CQ5T751 118 aa4.19□□□□□ -1.74
HDAC1-201ENST00000373548 KRTAP5-7Q6L8G8 165 aa4.09□□□□□ -1.76
HDAC1-201ENST00000373548 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.95□□□□□ -1.78
HDAC1-201ENST00000373548 MUC5BQ9HC84 5762 aaPredicted RBP3.85□□□□□ -1.79
HDAC1-201ENST00000373548 KRTAP21-2Q3LI59 83 aa3.82□□□□□ -1.8
HDAC1-201ENST00000373548 KRTAP5-11Q6L8G4 156 aa3.67□□□□□ -1.82
HDAC1-201ENST00000373548 AHNAKQ09666 5890 aaKnown RBP3.56□□□□□ -1.84
HDAC1-201ENST00000373548 KRTAP4-4Q9BYR3 166 aa3.43□□□□□ -1.86
HDAC1-201ENST00000373548 PHGR1C9JFL3 82 aa3.16□□□□□ -1.9
HDAC1-201ENST00000373548 MUC19Q7Z5P9 8384 aa2.94□□□□□ -1.94
HDAC1-201ENST00000373548 KRTAP21-1Q3LI58 79 aa2.93□□□□□ -1.94
HDAC1-201ENST00000373548 MUC16Q8WXI7 14507 aa2.09□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 15.8 ms