RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.29□□□□□ -1.88
SF3A3-201ENST00000373019 KRTAP9-7A8MTY7 169 aa3.28□□□□□ -1.88
SF3A3-201ENST00000373019 KRTAP4-7Q9BYR0 210 aa3.28□□□□□ -1.88
SF3A3-201ENST00000373019 MUC12Q9UKN1 5478 aa3.23□□□□□ -1.89
SF3A3-201ENST00000373019 KRTAP4-8A0A0G2JLE6 195 aa3.21□□□□□ -1.9
SF3A3-201ENST00000373019 KRTAP4-8Q9BYQ9 185 aa3.21□□□□□ -1.9
SF3A3-201ENST00000373019 SPRR2FQ96RM1 72 aa3.21□□□□□ -1.9
SF3A3-201ENST00000373019 DSTQ03001 7570 aaKnown RBP3.2□□□□□ -1.9
SF3A3-201ENST00000373019 KRTAP12-4P60329 112 aa3.18□□□□□ -1.9
SF3A3-201ENST00000373019 MDN1Q9NU22 5596 aa3.16□□□□□ -1.9
SF3A3-201ENST00000373019 KRTAP19-7Q3SYF9 63 aa3.15□□□□□ -1.91
SF3A3-201ENST00000373019 KRTAP6-3Q3LI67 103 aa3.12□□□□□ -1.91
SF3A3-201ENST00000373019 SPRR2EP22531 72 aa3.07□□□□□ -1.92
SF3A3-201ENST00000373019 SPRR2BP35325 72 aa3.07□□□□□ -1.92
SF3A3-201ENST00000373019 SPRR2AP35326 72 aa3.07□□□□□ -1.92
SF3A3-201ENST00000373019 MT1LQ93083 61 aa3.06□□□□□ -1.92
SF3A3-201ENST00000373019 LOC100996750A0A140TA64 210 aa3.04□□□□□ -1.92
SF3A3-201ENST00000373019 KRTAP19-4Q3LI73 84 aa3.04□□□□□ -1.92
SF3A3-201ENST00000373019 NEBP20929 6669 aa2.99□□□□□ -1.93
SF3A3-201ENST00000373019 LCE1AQ5T7P2 110 aa2.99□□□□□ -1.93
SF3A3-201ENST00000373019 MT1EP04732 61 aa2.98□□□□□ -1.93
SF3A3-201ENST00000373019 KRTAP5-9P26371 169 aa2.97□□□□□ -1.93
SF3A3-201ENST00000373019 OBSCNQ5VST9 7968 aa2.96□□□□□ -1.94
SF3A3-201ENST00000373019 LCE4AQ5TA78 99 aa2.95□□□□□ -1.94
SF3A3-201ENST00000373019 SPRR2DP22532 72 aa2.95□□□□□ -1.94
SF3A3-201ENST00000373019 LCE1EQ5T753 118 aa2.94□□□□□ -1.94
SF3A3-201ENST00000373019 KRTAP4-3Q9BYR4 195 aa2.94□□□□□ -1.94
SF3A3-201ENST00000373019 MT1GP13640 62 aa2.92□□□□□ -1.94
SF3A3-201ENST00000373019 KRTAP2-2Q9BYT5 123 aa2.92□□□□□ -1.94
SF3A3-201ENST00000373019 SYNE1Q8NF91 8797 aaKnown RBP2.9□□□□□ -1.94
SF3A3-201ENST00000373019 KRTAP4-9Q9BYQ8 210 aa2.89□□□□□ -1.95
SF3A3-201ENST00000373019 PRM1P04553 51 aa2.88□□□□□ -1.95
SF3A3-201ENST00000373019 KRTAP20-1Q3LI63 56 aa2.88□□□□□ -1.95
SF3A3-201ENST00000373019 KRTAP5-5Q701N2 237 aaPredicted RBP2.88□□□□□ -1.95
SF3A3-201ENST00000373019 KRTAP19-3Q7Z4W3 81 aa2.84□□□□□ -1.95
SF3A3-201ENST00000373019 LCE3BQ5TA77 95 aa2.8□□□□□ -1.96
SF3A3-201ENST00000373019 MT1AP04731 61 aa2.79□□□□□ -1.96
SF3A3-201ENST00000373019 LCE1DQ5T752 114 aa2.78□□□□□ -1.96
SF3A3-201ENST00000373019 LCE5AQ5TCM9 118 aa2.75□□□□□ -1.97
SF3A3-201ENST00000373019 MT1MQ8N339 61 aa2.75□□□□□ -1.97
SF3A3-201ENST00000373019 LCE3EQ5T5B0 92 aa2.75□□□□□ -1.97
SF3A3-201ENST00000373019 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
SF3A3-201ENST00000373019 KRTAP9-4Q9BYQ2 154 aa2.75□□□□□ -1.97
SF3A3-201ENST00000373019 MT4P47944 62 aa2.72□□□□□ -1.97
SF3A3-201ENST00000373019 KRTAP6-2Q3LI66 62 aa2.65□□□□□ -1.99
SF3A3-201ENST00000373019 KRTAP9-9Q9BYP9 154 aa2.65□□□□□ -1.99
SF3A3-201ENST00000373019 LCE1FQ5T754 118 aa2.64□□□□□ -1.99
SF3A3-201ENST00000373019 KRTAP6-1Q3LI64 71 aa2.63□□□□□ -1.99
SF3A3-201ENST00000373019 MUC19Q7Z5P9 8384 aa2.63□□□□□ -1.99
SF3A3-201ENST00000373019 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
SF3A3-201ENST00000373019 HMCN1Q96RW7 5635 aa2.5□□□□□ -2.01
SF3A3-201ENST00000373019 KRTAP4-6Q9BYQ5 205 aa2.5□□□□□ -2.01
SF3A3-201ENST00000373019 KRTAP5-4Q6L8H1 288 aa2.39□□□□□ -2.03
SF3A3-201ENST00000373019 KRTAP20-2Q3LI61 65 aa2.32□□□□□ -2.04
SF3A3-201ENST00000373019 AHNAK2Q8IVF2 5795 aa2.29□□□□□ -2.04
SF3A3-201ENST00000373019 MT3P25713 68 aa2.25□□□□□ -2.05
SF3A3-201ENST00000373019 KRTAP5-3Q6L8H2 238 aa2.19□□□□□ -2.06
SF3A3-201ENST00000373019 MUC5ACP98088 5654 aa2.17□□□□□ -2.06
SF3A3-201ENST00000373019 KRTAP4-11Q9BYQ6 195 aa2.14□□□□□ -2.07
SF3A3-201ENST00000373019 KRTAP5-2Q701N4 177 aa2.11□□□□□ -2.07
SF3A3-201ENST00000373019 LCE1BQ5T7P3 118 aa2.1□□□□□ -2.07
SF3A3-201ENST00000373019 KRTAP5-10Q6L8G5 202 aa2.1□□□□□ -2.07
SF3A3-201ENST00000373019 KRTAP4-12Q9BQ66 201 aa2.04□□□□□ -2.08
SF3A3-201ENST00000373019 MUC5BQ9HC84 5762 aaPredicted RBP2.02□□□□□ -2.09
SF3A3-201ENST00000373019 KRTAP5-7Q6L8G8 165 aa2.02□□□□□ -2.09
SF3A3-201ENST00000373019 KRTAP5-8O75690 187 aa1.99□□□□□ -2.09
SF3A3-201ENST00000373019 LCE1CQ5T751 118 aa1.93□□□□□ -2.1
SF3A3-201ENST00000373019 AHNAKQ09666 5890 aaKnown RBP1.91□□□□□ -2.1
SF3A3-201ENST00000373019 KRTAP5-1Q6L8H4 278 aa1.89□□□□□ -2.11
SF3A3-201ENST00000373019 KRTAP21-1Q3LI58 79 aa1.88□□□□□ -2.11
SF3A3-201ENST00000373019 KRTAP4-2Q9BYR5 136 aa1.86□□□□□ -2.11
SF3A3-201ENST00000373019 KRTAP21-2Q3LI59 83 aa1.69□□□□□ -2.14
SF3A3-201ENST00000373019 KRTAP4-4Q9BYR3 166 aa1.67□□□□□ -2.14
SF3A3-201ENST00000373019 KRTAP5-11Q6L8G4 156 aa1.59□□□□□ -2.16
SF3A3-201ENST00000373019 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.58□□□□□ -2.16
SF3A3-201ENST00000373019 PHGR1C9JFL3 82 aa1.41□□□□□ -2.18
SF3A3-201ENST00000373019 MUC16Q8WXI7 14507 aa0.93□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 12.3 ms