RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 LOC100996750A0A140TA64 210 aa5.38□□□□□ -1.55
SDC4-201ENST00000372733 KRTAP4-3Q9BYR4 195 aa5.37□□□□□ -1.55
SDC4-201ENST00000372733 FCGBPQ9Y6R7 5405 aaPredicted RBP5.31□□□□□ -1.56
SDC4-201ENST00000372733 MT1GP13640 62 aa5.29□□□□□ -1.56
SDC4-201ENST00000372733 MUC12Q9UKN1 5478 aa5.27□□□□□ -1.57
SDC4-201ENST00000372733 KRTAP19-6Q3LI70 58 aa5.27□□□□□ -1.57
SDC4-201ENST00000372733 CRCT1Q9UGL9 99 aa5.22□□□□□ -1.57
SDC4-201ENST00000372733 MT1MQ8N339 61 aa5.21□□□□□ -1.58
SDC4-201ENST00000372733 MACF1Q9UPN3 7388 aaKnown RBP5.16□□□□□ -1.58
SDC4-201ENST00000372733 KRTAP19-3Q7Z4W3 81 aa5.16□□□□□ -1.58
SDC4-201ENST00000372733 SYNE2Q8WXH0 6885 aaKnown RBP5.12□□□□□ -1.59
SDC4-201ENST00000372733 DSTQ03001 7570 aaKnown RBP5.1□□□□□ -1.59
SDC4-201ENST00000372733 KRTAP12-4P60329 112 aa5.09□□□□□ -1.59
SDC4-201ENST00000372733 KRTAP9-2Q9BYQ4 174 aa4.99□□□□□ -1.61
SDC4-201ENST00000372733 LCE3BQ5TA77 95 aa4.96□□□□□ -1.61
SDC4-201ENST00000372733 LCE5AQ5TCM9 118 aa4.95□□□□□ -1.62
SDC4-201ENST00000372733 SPRR2FQ96RM1 72 aa4.95□□□□□ -1.62
SDC4-201ENST00000372733 MDN1Q9NU22 5596 aa4.92□□□□□ -1.62
SDC4-201ENST00000372733 KRTAP4-9Q9BYQ8 210 aa4.92□□□□□ -1.62
SDC4-201ENST00000372733 SYNE1Q8NF91 8797 aaKnown RBP4.84□□□□□ -1.63
SDC4-201ENST00000372733 KRTAP6-1Q3LI64 71 aa4.79□□□□□ -1.64
SDC4-201ENST00000372733 MT1AP04731 61 aa4.74□□□□□ -1.65
SDC4-201ENST00000372733 LCE3DQ9BYE3 92 aa4.67□□□□□ -1.66
SDC4-201ENST00000372733 LCE3EQ5T5B0 92 aa4.62□□□□□ -1.67
SDC4-201ENST00000372733 KRTAP9-7A8MTY7 169 aa4.61□□□□□ -1.67
SDC4-201ENST00000372733 KRTAP5-5Q701N2 237 aaPredicted RBP4.6□□□□□ -1.67
SDC4-201ENST00000372733 LCE1AQ5T7P2 110 aa4.57□□□□□ -1.68
SDC4-201ENST00000372733 SPRR2EP22531 72 aa4.57□□□□□ -1.68
SDC4-201ENST00000372733 SPRR2BP35325 72 aa4.57□□□□□ -1.68
SDC4-201ENST00000372733 SPRR2AP35326 72 aa4.57□□□□□ -1.68
SDC4-201ENST00000372733 PRM1P04553 51 aa4.55□□□□□ -1.68
SDC4-201ENST00000372733 KRTAP4-6Q9BYQ5 205 aa4.52□□□□□ -1.69
SDC4-201ENST00000372733 KRTAP5-9P26371 169 aa4.51□□□□□ -1.69
SDC4-201ENST00000372733 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.45□□□□□ -1.7
SDC4-201ENST00000372733 KRTAP9-6A0A140TA67 174 aa4.4□□□□□ -1.7
SDC4-201ENST00000372733 KRTAP9-4Q9BYQ2 154 aa4.38□□□□□ -1.71
SDC4-201ENST00000372733 OBSCNQ5VST9 7968 aa4.38□□□□□ -1.71
SDC4-201ENST00000372733 KRTAP6-2Q3LI66 62 aa4.37□□□□□ -1.71
SDC4-201ENST00000372733 SPRR2DP22532 72 aa4.36□□□□□ -1.71
SDC4-201ENST00000372733 KRTAP6-3Q3LI67 103 aa4.29□□□□□ -1.72
SDC4-201ENST00000372733 MT3P25713 68 aa4.18□□□□□ -1.74
SDC4-201ENST00000372733 NEBP20929 6669 aa4.17□□□□□ -1.74
SDC4-201ENST00000372733 KRTAP4-12Q9BQ66 201 aa4□□□□□ -1.77
SDC4-201ENST00000372733 KRTAP2-2Q9BYT5 123 aa4□□□□□ -1.77
SDC4-201ENST00000372733 LCE4AQ5TA78 99 aa3.99□□□□□ -1.77
SDC4-201ENST00000372733 MT4P47944 62 aa3.95□□□□□ -1.78
SDC4-201ENST00000372733 KRTAP5-4Q6L8H1 288 aa3.87□□□□□ -1.79
SDC4-201ENST00000372733 KRTAP9-9Q9BYP9 154 aa3.82□□□□□ -1.8
SDC4-201ENST00000372733 HMCN1Q96RW7 5635 aa3.8□□□□□ -1.8
SDC4-201ENST00000372733 LCE1DQ5T752 114 aa3.73□□□□□ -1.81
SDC4-201ENST00000372733 KRTAP20-2Q3LI61 65 aa3.69□□□□□ -1.82
SDC4-201ENST00000372733 KRTAP5-2Q701N4 177 aa3.68□□□□□ -1.82
SDC4-201ENST00000372733 MUC5ACP98088 5654 aa3.64□□□□□ -1.83
SDC4-201ENST00000372733 KRTAP20-1Q3LI63 56 aa3.61□□□□□ -1.83
SDC4-201ENST00000372733 KRTAP4-2Q9BYR5 136 aa3.49□□□□□ -1.85
SDC4-201ENST00000372733 LCE1FQ5T754 118 aa3.48□□□□□ -1.85
SDC4-201ENST00000372733 KRTAP5-3Q6L8H2 238 aa3.47□□□□□ -1.85
SDC4-201ENST00000372733 KRTAP4-11Q9BYQ6 195 aa3.47□□□□□ -1.85
SDC4-201ENST00000372733 LCE1BQ5T7P3 118 aa3.42□□□□□ -1.86
SDC4-201ENST00000372733 KRTAP5-10Q6L8G5 202 aa3.4□□□□□ -1.86
SDC4-201ENST00000372733 LCE1EQ5T753 118 aa3.33□□□□□ -1.88
SDC4-201ENST00000372733 KRTAP5-1Q6L8H4 278 aa3.31□□□□□ -1.88
SDC4-201ENST00000372733 LCE1CQ5T751 118 aa3.16□□□□□ -1.9
SDC4-201ENST00000372733 AHNAK2Q8IVF2 5795 aa3.09□□□□□ -1.91
SDC4-201ENST00000372733 KRTAP21-2Q3LI59 83 aa3.06□□□□□ -1.92
SDC4-201ENST00000372733 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.99□□□□□ -1.93
SDC4-201ENST00000372733 KRTAP5-8O75690 187 aa2.98□□□□□ -1.93
SDC4-201ENST00000372733 MUC5BQ9HC84 5762 aaPredicted RBP2.91□□□□□ -1.94
SDC4-201ENST00000372733 GPR98Q8WXG9 6306 aa2.89□□□□□ -1.95
SDC4-201ENST00000372733 KRTAP4-4Q9BYR3 166 aa2.88□□□□□ -1.95
SDC4-201ENST00000372733 KRTAP21-1Q3LI58 79 aa2.84□□□□□ -1.95
SDC4-201ENST00000372733 MUC19Q7Z5P9 8384 aa2.81□□□□□ -1.96
SDC4-201ENST00000372733 KRTAP5-7Q6L8G8 165 aa2.78□□□□□ -1.96
SDC4-201ENST00000372733 KRTAP5-11Q6L8G4 156 aa2.71□□□□□ -1.98
SDC4-201ENST00000372733 AHNAKQ09666 5890 aaKnown RBP2.42□□□□□ -2.02
SDC4-201ENST00000372733 PHGR1C9JFL3 82 aa2.35□□□□□ -2.03
SDC4-201ENST00000372733 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 11.1 ms