RNA–Protein interactions for RNA: ENST00000368527.7

TPM3-209, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-209ENST00000368527 KRTAP10-5P60370 271 aa4.11□□□□□ -1.75
TPM3-209ENST00000368527 MT1XP80297 61 aa4.1□□□□□ -1.75
TPM3-209ENST00000368527 KRTAP10-12P60413 245 aa4.07□□□□□ -1.76
TPM3-209ENST00000368527 KRTAP12-3P60328 96 aa4□□□□□ -1.77
TPM3-209ENST00000368527 SSPOA2VEC9 5147 aa3.94□□□□□ -1.78
TPM3-209ENST00000368527 USH2AO75445 5202 aa3.94□□□□□ -1.78
TPM3-209ENST00000368527 KRTAP10-7P60409 375 aaPredicted RBP3.92□□□□□ -1.78
TPM3-209ENST00000368527 FCGBPQ9Y6R7 5405 aaPredicted RBP3.84□□□□□ -1.79
TPM3-209ENST00000368527 KRTAP19-5Q3LI72 72 aa3.79□□□□□ -1.8
TPM3-209ENST00000368527 KRTAP5-3Q6L8H2 238 aa3.77□□□□□ -1.81
TPM3-209ENST00000368527 LCE3CQ5T5A8 94 aa3.76□□□□□ -1.81
TPM3-209ENST00000368527 SYNE2Q8WXH0 6885 aaKnown RBP3.72□□□□□ -1.81
TPM3-209ENST00000368527 INE1O15225 51 aa3.71□□□□□ -1.82
TPM3-209ENST00000368527 MACF1Q9UPN3 7388 aaKnown RBP3.7□□□□□ -1.82
TPM3-209ENST00000368527 KRTAP19-6Q3LI70 58 aa3.68□□□□□ -1.82
TPM3-209ENST00000368527 KRTAP19-7Q3SYF9 63 aa3.65□□□□□ -1.83
TPM3-209ENST00000368527 MT1EP04732 61 aa3.6□□□□□ -1.83
TPM3-209ENST00000368527 MT1LQ93083 61 aa3.58□□□□□ -1.84
TPM3-209ENST00000368527 KRTAP6-3Q3LI67 103 aa3.56□□□□□ -1.84
TPM3-209ENST00000368527 LCE1AQ5T7P2 110 aa3.55□□□□□ -1.84
TPM3-209ENST00000368527 NEBP20929 6669 aa3.53□□□□□ -1.84
TPM3-209ENST00000368527 MUC12Q9UKN1 5478 aa3.52□□□□□ -1.85
TPM3-209ENST00000368527 KRTAP2-3P0C7H8 128 aa3.47□□□□□ -1.85
TPM3-209ENST00000368527 KRTAP2-4Q9BYR9 128 aa3.47□□□□□ -1.85
TPM3-209ENST00000368527 KRTAP2-1Q9BYU5 128 aa3.47□□□□□ -1.85
TPM3-209ENST00000368527 KRTAP9-6A8MVA2 160 aa3.46□□□□□ -1.86
TPM3-209ENST00000368527 MT1GP13640 62 aa3.45□□□□□ -1.86
TPM3-209ENST00000368527 KRTAP19-3Q7Z4W3 81 aa3.41□□□□□ -1.86
TPM3-209ENST00000368527 KMT2DO14686 5537 aa3.4□□□□□ -1.86
TPM3-209ENST00000368527 MDN1Q9NU22 5596 aa3.39□□□□□ -1.87
TPM3-209ENST00000368527 MT1MQ8N339 61 aa3.36□□□□□ -1.87
TPM3-209ENST00000368527 KRTAP5-9P26371 169 aa3.34□□□□□ -1.87
TPM3-209ENST00000368527 KRTAP20-1Q3LI63 56 aa3.33□□□□□ -1.88
TPM3-209ENST00000368527 KRTAP2-2Q9BYT5 123 aa3.27□□□□□ -1.89
TPM3-209ENST00000368527 SPRR2FQ96RM1 72 aa3.26□□□□□ -1.89
TPM3-209ENST00000368527 KRTAP4-3Q9BYR4 195 aa3.2□□□□□ -1.9
TPM3-209ENST00000368527 SPRR2EP22531 72 aa3.15□□□□□ -1.91
TPM3-209ENST00000368527 SPRR2BP35325 72 aa3.15□□□□□ -1.91
TPM3-209ENST00000368527 SPRR2AP35326 72 aa3.15□□□□□ -1.91
TPM3-209ENST00000368527 MT3P25713 68 aa3.1□□□□□ -1.91
TPM3-209ENST00000368527 MT1AP04731 61 aa3.07□□□□□ -1.92
TPM3-209ENST00000368527 SPRR2DP22532 72 aa3.04□□□□□ -1.92
TPM3-209ENST00000368527 KRTAP12-4P60329 112 aa2.99□□□□□ -1.93
TPM3-209ENST00000368527 KRTAP5-11Q6L8G4 156 aa2.99□□□□□ -1.93
TPM3-209ENST00000368527 KRTAP5-5Q701N2 237 aaPredicted RBP2.99□□□□□ -1.93
TPM3-209ENST00000368527 GPR98Q8WXG9 6306 aa2.97□□□□□ -1.93
TPM3-209ENST00000368527 KRTAP6-1Q3LI64 71 aa2.96□□□□□ -1.94
TPM3-209ENST00000368527 LCE1EQ5T753 118 aa2.96□□□□□ -1.94
TPM3-209ENST00000368527 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.92□□□□□ -1.94
TPM3-209ENST00000368527 LCE3DQ9BYE3 92 aa2.9□□□□□ -1.95
TPM3-209ENST00000368527 DSTQ03001 7570 aaKnown RBP2.89□□□□□ -1.95
TPM3-209ENST00000368527 LCE3EQ5T5B0 92 aa2.87□□□□□ -1.95
TPM3-209ENST00000368527 LCE1FQ5T754 118 aa2.86□□□□□ -1.95
TPM3-209ENST00000368527 HMCN1Q96RW7 5635 aa2.77□□□□□ -1.97
TPM3-209ENST00000368527 SYNE1Q8NF91 8797 aaKnown RBP2.76□□□□□ -1.97
TPM3-209ENST00000368527 AHNAK2Q8IVF2 5795 aa2.72□□□□□ -1.97
TPM3-209ENST00000368527 KRTAP5-4Q6L8H1 288 aa2.72□□□□□ -1.97
TPM3-209ENST00000368527 MT4P47944 62 aa2.69□□□□□ -1.98
TPM3-209ENST00000368527 KRTAP6-2Q3LI66 62 aa2.69□□□□□ -1.98
TPM3-209ENST00000368527 KRTAP5-10Q6L8G5 202 aa2.66□□□□□ -1.98
TPM3-209ENST00000368527 PRM1P04553 51 aa2.6□□□□□ -1.99
TPM3-209ENST00000368527 KRTAP5-7Q6L8G8 165 aa2.56□□□□□ -2
TPM3-209ENST00000368527 KRTAP5-1Q6L8H4 278 aa2.53□□□□□ -2
TPM3-209ENST00000368527 KRTAP5-2Q701N4 177 aa2.53□□□□□ -2
TPM3-209ENST00000368527 KRTAP20-2Q3LI61 65 aa2.51□□□□□ -2.01
TPM3-209ENST00000368527 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
TPM3-209ENST00000368527 OBSCNQ5VST9 7968 aa2.36□□□□□ -2.03
TPM3-209ENST00000368527 AHNAKQ09666 5890 aaKnown RBP2.29□□□□□ -2.04
TPM3-209ENST00000368527 MUC5BQ9HC84 5762 aaPredicted RBP2.29□□□□□ -2.04
TPM3-209ENST00000368527 KRTAP5-8O75690 187 aa2.27□□□□□ -2.05
TPM3-209ENST00000368527 MUC5ACP98088 5654 aa2.26□□□□□ -2.05
TPM3-209ENST00000368527 LCE1CQ5T751 118 aa2.19□□□□□ -2.06
TPM3-209ENST00000368527 LCE1BQ5T7P3 118 aa2.19□□□□□ -2.06
TPM3-209ENST00000368527 KRTAP21-2Q3LI59 83 aa1.95□□□□□ -2.1
TPM3-209ENST00000368527 KRTAP21-1Q3LI58 79 aa1.69□□□□□ -2.14
TPM3-209ENST00000368527 MUC19Q7Z5P9 8384 aa1.65□□□□□ -2.15
TPM3-209ENST00000368527 PHGR1C9JFL3 82 aa1.61□□□□□ -2.15
TPM3-209ENST00000368527 MUC16Q8WXI7 14507 aa1.11□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 11.3 ms