RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 KRTAP20-1Q3LI63 56 aa3.08□□□□□ -1.92
CHD3-202ENST00000358181 KRTAP19-3Q7Z4W3 81 aa3.07□□□□□ -1.92
CHD3-202ENST00000358181 KRTAP9-6A0A140TA67 174 aa3.03□□□□□ -1.92
CHD3-202ENST00000358181 KRTAP19-6Q3LI70 58 aa3.02□□□□□ -1.93
CHD3-202ENST00000358181 MT1LQ93083 61 aa3□□□□□ -1.93
CHD3-202ENST00000358181 FSIP2Q5CZC0 6907 aa2.99□□□□□ -1.93
CHD3-202ENST00000358181 KRTAP4-9Q9BYQ8 210 aa2.98□□□□□ -1.93
CHD3-202ENST00000358181 MT1EP04732 61 aa2.98□□□□□ -1.93
CHD3-202ENST00000358181 KRTAP19-2Q3LHN2 52 aa2.97□□□□□ -1.93
CHD3-202ENST00000358181 PCLOQ9Y6V0 5065 aa2.97□□□□□ -1.93
CHD3-202ENST00000358181 SYNE2Q8WXH0 6885 aaKnown RBP2.96□□□□□ -1.94
CHD3-202ENST00000358181 LCE4AQ5TA78 99 aa2.96□□□□□ -1.94
CHD3-202ENST00000358181 HERC1Q15751 4861 aa2.96□□□□□ -1.94
CHD3-202ENST00000358181 MUC17Q685J3 4493 aa2.95□□□□□ -1.94
CHD3-202ENST00000358181 BIRC6Q9NR09 4857 aa2.95□□□□□ -1.94
CHD3-202ENST00000358181 MT1MQ8N339 61 aa2.91□□□□□ -1.94
CHD3-202ENST00000358181 EPPK1P58107 5090 aaKnown RBP2.87□□□□□ -1.95
CHD3-202ENST00000358181 LCE2AQ5TA79 106 aaPredicted RBP2.84□□□□□ -1.95
CHD3-202ENST00000358181 KRTAP9-7A8MTY7 169 aa2.84□□□□□ -1.95
CHD3-202ENST00000358181 HMCN2Q8NDA2 5059 aa2.8□□□□□ -1.96
CHD3-202ENST00000358181 FAT4Q6V0I7 4981 aa2.74□□□□□ -1.97
CHD3-202ENST00000358181 KRTAP2-3P0C7H8 128 aa2.71□□□□□ -1.98
CHD3-202ENST00000358181 KRTAP2-4Q9BYR9 128 aa2.71□□□□□ -1.98
CHD3-202ENST00000358181 KRTAP19-7Q3SYF9 63 aa2.7□□□□□ -1.98
CHD3-202ENST00000358181 KRTAP6-2Q3LI66 62 aa2.7□□□□□ -1.98
CHD3-202ENST00000358181 ABCA13Q86UQ4 5058 aa2.69□□□□□ -1.98
CHD3-202ENST00000358181 MUC2Q02817 5179 aa2.69□□□□□ -1.98
CHD3-202ENST00000358181 KRTAP2-1Q9BYU5 128 aa2.67□□□□□ -1.98
CHD3-202ENST00000358181 UBR4Q5T4S7 5183 aa2.65□□□□□ -1.98
CHD3-202ENST00000358181 KRTAP9-9Q9BYP9 154 aa2.65□□□□□ -1.99
CHD3-202ENST00000358181 MT1AP04731 61 aa2.63□□□□□ -1.99
CHD3-202ENST00000358181 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.62□□□□□ -1.99
CHD3-202ENST00000358181 KRTAP6-1Q3LI64 71 aa2.62□□□□□ -1.99
CHD3-202ENST00000358181 KRTAP20-2Q3LI61 65 aa2.61□□□□□ -1.99
CHD3-202ENST00000358181 RNF213Q63HN8 5207 aa2.57□□□□□ -2
CHD3-202ENST00000358181 KRTAP2-2Q9BYT5 123 aa2.56□□□□□ -2
CHD3-202ENST00000358181 KRTAP9-6A8MVA2 160 aa2.54□□□□□ -2
CHD3-202ENST00000358181 KMT2DO14686 5537 aa2.54□□□□□ -2
CHD3-202ENST00000358181 KRTAP9-4Q9BYQ2 154 aa2.51□□□□□ -2.01
CHD3-202ENST00000358181 KRTAP6-3Q3LI67 103 aa2.5□□□□□ -2.01
CHD3-202ENST00000358181 SYNE1Q8NF91 8797 aaKnown RBP2.48□□□□□ -2.01
CHD3-202ENST00000358181 OBSCNQ5VST9 7968 aa2.42□□□□□ -2.02
CHD3-202ENST00000358181 KRTAP4-6Q9BYQ5 205 aa2.41□□□□□ -2.02
CHD3-202ENST00000358181 KRTAP4-11Q9BYQ6 195 aa2.4□□□□□ -2.03
CHD3-202ENST00000358181 KRTAP4-4Q9BYR3 166 aa2.4□□□□□ -2.03
CHD3-202ENST00000358181 KRTAP4-12Q9BQ66 201 aa2.38□□□□□ -2.03
CHD3-202ENST00000358181 KRTAP4-2Q9BYR5 136 aa2.38□□□□□ -2.03
CHD3-202ENST00000358181 FCGBPQ9Y6R7 5405 aaPredicted RBP2.37□□□□□ -2.03
CHD3-202ENST00000358181 DSTQ03001 7570 aaKnown RBP2.34□□□□□ -2.03
CHD3-202ENST00000358181 MACF1Q9UPN3 7388 aaKnown RBP2.29□□□□□ -2.04
CHD3-202ENST00000358181 USH2AO75445 5202 aa2.26□□□□□ -2.05
CHD3-202ENST00000358181 SSPOA2VEC9 5147 aa2.18□□□□□ -2.06
CHD3-202ENST00000358181 MUC12Q9UKN1 5478 aa2.11□□□□□ -2.07
CHD3-202ENST00000358181 NEBP20929 6669 aa2.08□□□□□ -2.08
CHD3-202ENST00000358181 KRTAP5-9P26371 169 aa2.02□□□□□ -2.09
CHD3-202ENST00000358181 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
CHD3-202ENST00000358181 KRTAP5-5Q701N2 237 aaPredicted RBP1.92□□□□□ -2.1
CHD3-202ENST00000358181 PHGR1C9JFL3 82 aa1.85□□□□□ -2.11
CHD3-202ENST00000358181 KRTAP5-4Q6L8H1 288 aa1.85□□□□□ -2.11
CHD3-202ENST00000358181 GPR98Q8WXG9 6306 aa1.84□□□□□ -2.11
CHD3-202ENST00000358181 MDN1Q9NU22 5596 aa1.82□□□□□ -2.12
CHD3-202ENST00000358181 KRTAP5-3Q6L8H2 238 aa1.69□□□□□ -2.14
CHD3-202ENST00000358181 MUC5ACP98088 5654 aa1.68□□□□□ -2.14
CHD3-202ENST00000358181 KRTAP5-8O75690 187 aa1.61□□□□□ -2.15
CHD3-202ENST00000358181 AHNAK2Q8IVF2 5795 aa1.55□□□□□ -2.16
CHD3-202ENST00000358181 HMCN1Q96RW7 5635 aa1.54□□□□□ -2.16
CHD3-202ENST00000358181 KRTAP5-2Q701N4 177 aa1.47□□□□□ -2.17
CHD3-202ENST00000358181 KRTAP5-10Q6L8G5 202 aa1.42□□□□□ -2.18
CHD3-202ENST00000358181 AHNAKQ09666 5890 aaKnown RBP1.37□□□□□ -2.19
CHD3-202ENST00000358181 KRTAP5-1Q6L8H4 278 aa1.35□□□□□ -2.19
CHD3-202ENST00000358181 KRTAP21-1Q3LI58 79 aa1.33□□□□□ -2.2
CHD3-202ENST00000358181 MUC5BQ9HC84 5762 aaPredicted RBP1.29□□□□□ -2.2
CHD3-202ENST00000358181 KRTAP21-2Q3LI59 83 aa1.23□□□□□ -2.21
CHD3-202ENST00000358181 KRTAP5-11Q6L8G4 156 aa1.2□□□□□ -2.22
CHD3-202ENST00000358181 KRTAP5-7Q6L8G8 165 aa1.11□□□□□ -2.23
CHD3-202ENST00000358181 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.06□□□□□ -2.24
CHD3-202ENST00000358181 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 49 ms