RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 MUC12Q9UKN1 5478 aa1.69□□□□□ -2.14
LIG4-201ENST00000356922 KRTAP12-2P59991 146 aa1.68□□□□□ -2.14
LIG4-201ENST00000356922 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.68□□□□□ -2.14
LIG4-201ENST00000356922 MDN1Q9NU22 5596 aa1.67□□□□□ -2.14
LIG4-201ENST00000356922 KRTAP12-1P59990 96 aa1.67□□□□□ -2.14
LIG4-201ENST00000356922 LCE1DQ5T752 114 aa1.66□□□□□ -2.14
LIG4-201ENST00000356922 LCE5AQ5TCM9 118 aa1.65□□□□□ -2.14
LIG4-201ENST00000356922 KRTAP10-7P60409 375 aaPredicted RBP1.65□□□□□ -2.15
LIG4-201ENST00000356922 TNP1P09430 55 aa1.62□□□□□ -2.15
LIG4-201ENST00000356922 KRTAP10-12P60413 245 aa1.59□□□□□ -2.15
LIG4-201ENST00000356922 KRTAP8-1Q8IUC2 63 aa1.58□□□□□ -2.16
LIG4-201ENST00000356922 DSTQ03001 7570 aaKnown RBP1.56□□□□□ -2.16
LIG4-201ENST00000356922 SPRR2FQ96RM1 72 aa1.55□□□□□ -2.16
LIG4-201ENST00000356922 HMCN1Q96RW7 5635 aa1.54□□□□□ -2.16
LIG4-201ENST00000356922 KRTAP5-9P26371 169 aa1.54□□□□□ -2.16
LIG4-201ENST00000356922 KRTAP6-3Q3LI67 103 aa1.54□□□□□ -2.16
LIG4-201ENST00000356922 KRTAP4-11Q9BYQ6 195 aa1.54□□□□□ -2.16
LIG4-201ENST00000356922 NEBP20929 6669 aa1.54□□□□□ -2.16
LIG4-201ENST00000356922 KRTAP19-7Q3SYF9 63 aa1.53□□□□□ -2.16
LIG4-201ENST00000356922 PP632Q6XCG6 107 aa1.53□□□□□ -2.16
LIG4-201ENST00000356922 LCE3AQ5TA76 89 aa1.52□□□□□ -2.17
LIG4-201ENST00000356922 INE1O15225 51 aa1.52□□□□□ -2.17
LIG4-201ENST00000356922 KRTAP19-5Q3LI72 72 aa1.5□□□□□ -2.17
LIG4-201ENST00000356922 LCE1AQ5T7P2 110 aa1.49□□□□□ -2.17
LIG4-201ENST00000356922 MT3P25713 68 aa1.49□□□□□ -2.17
LIG4-201ENST00000356922 MT1EP04732 61 aa1.48□□□□□ -2.17
LIG4-201ENST00000356922 SPRR2EP22531 72 aa1.48□□□□□ -2.17
LIG4-201ENST00000356922 SPRR2BP35325 72 aa1.48□□□□□ -2.17
LIG4-201ENST00000356922 SPRR2AP35326 72 aa1.48□□□□□ -2.17
LIG4-201ENST00000356922 KRTAP12-3P60328 96 aa1.47□□□□□ -2.17
LIG4-201ENST00000356922 MT1LQ93083 61 aa1.44□□□□□ -2.18
LIG4-201ENST00000356922 KRTAP4-3Q9BYR4 195 aa1.44□□□□□ -2.18
LIG4-201ENST00000356922 SPRR2DP22532 72 aa1.43□□□□□ -2.18
LIG4-201ENST00000356922 KRTAP19-3Q7Z4W3 81 aa1.43□□□□□ -2.18
LIG4-201ENST00000356922 AHNAKQ09666 5890 aaKnown RBP1.42□□□□□ -2.18
LIG4-201ENST00000356922 KRTAP5-2Q701N4 177 aa1.41□□□□□ -2.18
LIG4-201ENST00000356922 SPRR5A0A1B0GTR4 108 aa1.4□□□□□ -2.18
LIG4-201ENST00000356922 MT1MQ8N339 61 aa1.4□□□□□ -2.19
LIG4-201ENST00000356922 MT1GP13640 62 aa1.4□□□□□ -2.19
LIG4-201ENST00000356922 MUC5BQ9HC84 5762 aaPredicted RBP1.39□□□□□ -2.19
LIG4-201ENST00000356922 KRTAP20-1Q3LI63 56 aa1.38□□□□□ -2.19
LIG4-201ENST00000356922 KRTAP2-3P0C7H8 128 aa1.36□□□□□ -2.19
LIG4-201ENST00000356922 KRTAP2-4Q9BYR9 128 aa1.36□□□□□ -2.19
LIG4-201ENST00000356922 SYNE1Q8NF91 8797 aaKnown RBP1.35□□□□□ -2.19
LIG4-201ENST00000356922 LCE3CQ5T5A8 94 aa1.35□□□□□ -2.19
LIG4-201ENST00000356922 KRTAP5-4Q6L8H1 288 aa1.35□□□□□ -2.19
LIG4-201ENST00000356922 KRTAP9-6A8MVA2 160 aa1.34□□□□□ -2.19
LIG4-201ENST00000356922 KRTAP2-2Q9BYT5 123 aa1.33□□□□□ -2.2
LIG4-201ENST00000356922 KRTAP2-1Q9BYU5 128 aa1.33□□□□□ -2.2
LIG4-201ENST00000356922 KRTAP5-5Q701N2 237 aaPredicted RBP1.29□□□□□ -2.2
LIG4-201ENST00000356922 OBSCNQ5VST9 7968 aa1.29□□□□□ -2.2
LIG4-201ENST00000356922 MT4P47944 62 aa1.27□□□□□ -2.21
LIG4-201ENST00000356922 KRTAP12-4P60329 112 aa1.24□□□□□ -2.21
LIG4-201ENST00000356922 KRTAP6-1Q3LI64 71 aa1.24□□□□□ -2.21
LIG4-201ENST00000356922 LCE1FQ5T754 118 aa1.23□□□□□ -2.21
LIG4-201ENST00000356922 MT1AP04731 61 aa1.2□□□□□ -2.22
LIG4-201ENST00000356922 KRTAP20-2Q3LI61 65 aa1.19□□□□□ -2.22
LIG4-201ENST00000356922 AHNAK2Q8IVF2 5795 aa1.18□□□□□ -2.22
LIG4-201ENST00000356922 KRTAP4-4Q9BYR3 166 aa1.15□□□□□ -2.22
LIG4-201ENST00000356922 KRTAP6-2Q3LI66 62 aa1.15□□□□□ -2.23
LIG4-201ENST00000356922 LCE1EQ5T753 118 aa1.15□□□□□ -2.23
LIG4-201ENST00000356922 KRTAP5-8O75690 187 aa1.15□□□□□ -2.23
LIG4-201ENST00000356922 LCE3EQ5T5B0 92 aa1.11□□□□□ -2.23
LIG4-201ENST00000356922 KRTAP5-10Q6L8G5 202 aa1.1□□□□□ -2.23
LIG4-201ENST00000356922 KRTAP5-11Q6L8G4 156 aa1.07□□□□□ -2.24
LIG4-201ENST00000356922 LCE3DQ9BYE3 92 aa1.03□□□□□ -2.24
LIG4-201ENST00000356922 MUC5ACP98088 5654 aa1.03□□□□□ -2.25
LIG4-201ENST00000356922 KRTAP5-1Q6L8H4 278 aa1.02□□□□□ -2.25
LIG4-201ENST00000356922 KRTAP5-7Q6L8G8 165 aa1.01□□□□□ -2.25
LIG4-201ENST00000356922 LCE1BQ5T7P3 118 aa0.99□□□□□ -2.25
LIG4-201ENST00000356922 PRM1P04553 51 aa0.97□□□□□ -2.25
LIG4-201ENST00000356922 MUC19Q7Z5P9 8384 aa0.97□□□□□ -2.25
LIG4-201ENST00000356922 LCE1CQ5T751 118 aa0.91□□□□□ -2.26
LIG4-201ENST00000356922 KRTAP21-2Q3LI59 83 aa0.82□□□□□ -2.28
LIG4-201ENST00000356922 PHGR1C9JFL3 82 aa0.71□□□□□ -2.3
LIG4-201ENST00000356922 MUC16Q8WXI7 14507 aa0.65□□□□□ -2.31
LIG4-201ENST00000356922 KRTAP21-1Q3LI58 79 aa0.6□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 54.9 ms