RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 LOC100996750A0A140TA64 210 aa4.48□□□□□ -1.69
LMX1B-201ENST00000355497 LPAP08519 4548 aa4.45□□□□□ -1.7
LMX1B-201ENST00000355497 MUC17Q685J3 4493 aa4.45□□□□□ -1.7
LMX1B-201ENST00000355497 KRTAP4-3Q9BYR4 195 aa4.38□□□□□ -1.71
LMX1B-201ENST00000355497 FLGP20930 4061 aaPredicted RBP4.36□□□□□ -1.71
LMX1B-201ENST00000355497 KRTAP19-6Q3LI70 58 aa4.35□□□□□ -1.71
LMX1B-201ENST00000355497 MT1AP04731 61 aa4.29□□□□□ -1.72
LMX1B-201ENST00000355497 LCE5AQ5TCM9 118 aa4.29□□□□□ -1.72
LMX1B-201ENST00000355497 KRTAP4-9Q9BYQ8 210 aa4.21□□□□□ -1.74
LMX1B-201ENST00000355497 KRTAP2-3P0C7H8 128 aa4.2□□□□□ -1.74
LMX1B-201ENST00000355497 KRTAP2-4Q9BYR9 128 aa4.2□□□□□ -1.74
LMX1B-201ENST00000355497 KRTAP2-1Q9BYU5 128 aa4.2□□□□□ -1.74
LMX1B-201ENST00000355497 HMCN2Q8NDA2 5059 aa4.2□□□□□ -1.74
LMX1B-201ENST00000355497 LCE2AQ5TA79 106 aaPredicted RBP4.19□□□□□ -1.74
LMX1B-201ENST00000355497 KRTAP9-2Q9BYQ4 174 aa4.19□□□□□ -1.74
LMX1B-201ENST00000355497 KRTAP19-7Q3SYF9 63 aa4.15□□□□□ -1.75
LMX1B-201ENST00000355497 KRTAP9-6A0A140TA67 174 aa4.11□□□□□ -1.75
LMX1B-201ENST00000355497 RNF213Q63HN8 5207 aa4.07□□□□□ -1.76
LMX1B-201ENST00000355497 FAT4Q6V0I7 4981 aa4.04□□□□□ -1.76
LMX1B-201ENST00000355497 KRTAP6-2Q3LI66 62 aa4.04□□□□□ -1.76
LMX1B-201ENST00000355497 KRTAP20-1Q3LI63 56 aa4.03□□□□□ -1.76
LMX1B-201ENST00000355497 LCE1CQ5T751 118 aa4.02□□□□□ -1.77
LMX1B-201ENST00000355497 LCE1EQ5T753 118 aa4.02□□□□□ -1.77
LMX1B-201ENST00000355497 LCE1FQ5T754 118 aa4.02□□□□□ -1.77
LMX1B-201ENST00000355497 LCE1AQ5T7P2 110 aa4.02□□□□□ -1.77
LMX1B-201ENST00000355497 KRTAP6-1Q3LI64 71 aa3.96□□□□□ -1.77
LMX1B-201ENST00000355497 KRTAP9-4Q9BYQ2 154 aa3.96□□□□□ -1.77
LMX1B-201ENST00000355497 SYNE1Q8NF91 8797 aaKnown RBP3.95□□□□□ -1.78
LMX1B-201ENST00000355497 UBR4Q5T4S7 5183 aa3.88□□□□□ -1.79
LMX1B-201ENST00000355497 LCE4AQ5TA78 99 aa3.86□□□□□ -1.79
LMX1B-201ENST00000355497 KRTAP6-3Q3LI67 103 aa3.82□□□□□ -1.8
LMX1B-201ENST00000355497 KRTAP9-7A8MTY7 169 aa3.81□□□□□ -1.8
LMX1B-201ENST00000355497 KRTAP9-6A8MVA2 160 aa3.8□□□□□ -1.8
LMX1B-201ENST00000355497 SYNE2Q8WXH0 6885 aaKnown RBP3.76□□□□□ -1.81
LMX1B-201ENST00000355497 FSIP2Q5CZC0 6907 aa3.69□□□□□ -1.82
LMX1B-201ENST00000355497 KRTAP2-2Q9BYT5 123 aa3.68□□□□□ -1.82
LMX1B-201ENST00000355497 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.64□□□□□ -1.83
LMX1B-201ENST00000355497 MUC2Q02817 5179 aa3.61□□□□□ -1.83
LMX1B-201ENST00000355497 OBSCNQ5VST9 7968 aa3.57□□□□□ -1.84
LMX1B-201ENST00000355497 KRTAP9-9Q9BYP9 154 aa3.48□□□□□ -1.85
LMX1B-201ENST00000355497 KRTAP4-11Q9BYQ6 195 aa3.43□□□□□ -1.86
LMX1B-201ENST00000355497 USH2AO75445 5202 aa3.41□□□□□ -1.86
LMX1B-201ENST00000355497 KRTAP5-9P26371 169 aa3.3□□□□□ -1.88
LMX1B-201ENST00000355497 KRTAP20-2Q3LI61 65 aa3.28□□□□□ -1.88
LMX1B-201ENST00000355497 SSPOA2VEC9 5147 aa3.27□□□□□ -1.89
LMX1B-201ENST00000355497 FCGBPQ9Y6R7 5405 aaPredicted RBP3.22□□□□□ -1.89
LMX1B-201ENST00000355497 DSTQ03001 7570 aaKnown RBP3.17□□□□□ -1.9
LMX1B-201ENST00000355497 KRTAP4-6Q9BYQ5 205 aa3.13□□□□□ -1.91
LMX1B-201ENST00000355497 KMT2DO14686 5537 aa3.13□□□□□ -1.91
LMX1B-201ENST00000355497 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
LMX1B-201ENST00000355497 NEBP20929 6669 aa3.1□□□□□ -1.91
LMX1B-201ENST00000355497 MACF1Q9UPN3 7388 aaKnown RBP3.09□□□□□ -1.91
LMX1B-201ENST00000355497 KRTAP4-12Q9BQ66 201 aa3.01□□□□□ -1.93
LMX1B-201ENST00000355497 KRTAP4-2Q9BYR5 136 aa3.01□□□□□ -1.93
LMX1B-201ENST00000355497 MUC12Q9UKN1 5478 aa2.9□□□□□ -1.95
LMX1B-201ENST00000355497 KRTAP5-4Q6L8H1 288 aa2.89□□□□□ -1.95
LMX1B-201ENST00000355497 MDN1Q9NU22 5596 aa2.89□□□□□ -1.95
LMX1B-201ENST00000355497 KRTAP5-5Q701N2 237 aaPredicted RBP2.87□□□□□ -1.95
LMX1B-201ENST00000355497 MUC19Q7Z5P9 8384 aa2.81□□□□□ -1.96
LMX1B-201ENST00000355497 GPR98Q8WXG9 6306 aa2.76□□□□□ -1.97
LMX1B-201ENST00000355497 KRTAP5-3Q6L8H2 238 aa2.5□□□□□ -2.01
LMX1B-201ENST00000355497 KRTAP5-2Q701N4 177 aa2.34□□□□□ -2.04
LMX1B-201ENST00000355497 MUC5ACP98088 5654 aa2.31□□□□□ -2.04
LMX1B-201ENST00000355497 HMCN1Q96RW7 5635 aa2.29□□□□□ -2.04
LMX1B-201ENST00000355497 KRTAP5-10Q6L8G5 202 aa2.28□□□□□ -2.04
LMX1B-201ENST00000355497 PHGR1C9JFL3 82 aa2.25□□□□□ -2.05
LMX1B-201ENST00000355497 KRTAP5-8O75690 187 aa2.24□□□□□ -2.05
LMX1B-201ENST00000355497 AHNAK2Q8IVF2 5795 aa2.22□□□□□ -2.05
LMX1B-201ENST00000355497 KRTAP5-7Q6L8G8 165 aa2.14□□□□□ -2.07
LMX1B-201ENST00000355497 MUC5BQ9HC84 5762 aaPredicted RBP2.07□□□□□ -2.08
LMX1B-201ENST00000355497 KRTAP5-1Q6L8H4 278 aa2.03□□□□□ -2.08
LMX1B-201ENST00000355497 KRTAP5-11Q6L8G4 156 aa1.99□□□□□ -2.09
LMX1B-201ENST00000355497 AHNAKQ09666 5890 aaKnown RBP1.92□□□□□ -2.1
LMX1B-201ENST00000355497 KRTAP21-2Q3LI59 83 aa1.9□□□□□ -2.1
LMX1B-201ENST00000355497 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.89□□□□□ -2.11
LMX1B-201ENST00000355497 KRTAP21-1Q3LI58 79 aa1.85□□□□□ -2.11
LMX1B-201ENST00000355497 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 156.1 ms