RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 MT1LQ93083 61 aa5.13□□□□□ -1.59
PRPF40A-201ENST00000354363 HMCN1Q96RW7 5635 aa5.12□□□□□ -1.59
PRPF40A-201ENST00000354363 KRTAP4-3Q9BYR4 195 aa5.06□□□□□ -1.6
PRPF40A-201ENST00000354363 KRTAP5-4Q6L8H1 288 aa5.05□□□□□ -1.6
PRPF40A-201ENST00000354363 AHNAK2Q8IVF2 5795 aa5.04□□□□□ -1.6
PRPF40A-201ENST00000354363 LCE3AQ5TA76 89 aa5.03□□□□□ -1.6
PRPF40A-201ENST00000354363 C10orf95Q9H7T3 257 aa5.03□□□□□ -1.6
PRPF40A-201ENST00000354363 SMIM26A0A096LP01 95 aa5□□□□□ -1.61
PRPF40A-201ENST00000354363 A8MU10 97 aa4.98□□□□□ -1.61
PRPF40A-201ENST00000354363 COX7CP15954 63 aa4.98□□□□□ -1.61
PRPF40A-201ENST00000354363 H7BZZ5 65 aa4.97□□□□□ -1.61
PRPF40A-201ENST00000354363 TNP1P09430 55 aa4.97□□□□□ -1.61
PRPF40A-201ENST00000354363 KRTAP5-10Q6L8G5 202 aa4.97□□□□□ -1.61
PRPF40A-201ENST00000354363 A0A1B0GU69 56 aa4.96□□□□□ -1.62
PRPF40A-201ENST00000354363 ANAPC13Q9BS18 74 aa4.83□□□□□ -1.64
PRPF40A-201ENST00000354363 KRTAP12-3P60328 96 aa4.83□□□□□ -1.64
PRPF40A-201ENST00000354363 KRTAP5-7Q6L8G8 165 aa4.8□□□□□ -1.64
PRPF40A-201ENST00000354363 KRTAP5-3Q6L8H2 238 aa4.8□□□□□ -1.64
PRPF40A-201ENST00000354363 KRTAP20-2Q3LI61 65 aa4.77□□□□□ -1.65
PRPF40A-201ENST00000354363 KRTAP5-5Q701N2 237 aaPredicted RBP4.75□□□□□ -1.65
PRPF40A-201ENST00000354363 RPS28P62857 69 aaKnown RBP4.75□□□□□ -1.65
PRPF40A-201ENST00000354363 PRR15LQ9BU68 103 aa4.74□□□□□ -1.65
PRPF40A-201ENST00000354363 SPRR5A0A1B0GTR4 108 aa4.72□□□□□ -1.65
PRPF40A-201ENST00000354363 CCDC179H3BU77 68 aa4.68□□□□□ -1.66
PRPF40A-201ENST00000354363 KRTAP12-4P60329 112 aa4.66□□□□□ -1.66
PRPF40A-201ENST00000354363 LINC01558Q9Y6Z2 57 aa4.66□□□□□ -1.66
PRPF40A-201ENST00000354363 TMEM258P61165 79 aa4.62□□□□□ -1.67
PRPF40A-201ENST00000354363 ATP5EP56381 51 aaPredicted RBP4.61□□□□□ -1.67
PRPF40A-201ENST00000354363 SYNE1Q8NF91 8797 aaKnown RBP4.59□□□□□ -1.67
PRPF40A-201ENST00000354363 UQCR11O14957 56 aa4.58□□□□□ -1.68
PRPF40A-201ENST00000354363 KRTAP25-1Q3LHN0 102 aa4.58□□□□□ -1.68
PRPF40A-201ENST00000354363 KRTAP23-1A1A580 65 aa4.55□□□□□ -1.68
PRPF40A-201ENST00000354363 PRO0628Q9UI54 55 aa4.51□□□□□ -1.69
PRPF40A-201ENST00000354363 MIR22HGQ0VDD5 57 aa4.46□□□□□ -1.7
PRPF40A-201ENST00000354363 KRTAP15-1Q3LI76 137 aa4.44□□□□□ -1.7
PRPF40A-201ENST00000354363 LCE3CQ5T5A8 94 aa4.43□□□□□ -1.7
PRPF40A-201ENST00000354363 K7ERS5 55 aa4.4□□□□□ -1.7
PRPF40A-201ENST00000354363 KRTAP5-2Q701N4 177 aa4.39□□□□□ -1.71
PRPF40A-201ENST00000354363 MT1AP04731 61 aa4.36□□□□□ -1.71
PRPF40A-201ENST00000354363 KRTAP6-1Q3LI64 71 aa4.36□□□□□ -1.71
PRPF40A-201ENST00000354363 V9GYY9 64 aa4.35□□□□□ -1.71
PRPF40A-201ENST00000354363 KRTAP5-8O75690 187 aa4.27□□□□□ -1.73
PRPF40A-201ENST00000354363 PSPHP1O15172 72 aa4.25□□□□□ -1.73
PRPF40A-201ENST00000354363 Q1T7F1 81 aa4.23□□□□□ -1.73
PRPF40A-201ENST00000354363 PMAIP1Q13794 54 aa4.22□□□□□ -1.73
PRPF40A-201ENST00000354363 BRK1Q8WUW1 75 aa4.22□□□□□ -1.73
PRPF40A-201ENST00000354363 KRTAP9-6A8MVA2 160 aa4.2□□□□□ -1.74
PRPF40A-201ENST00000354363 KRTAP6-2Q3LI66 62 aa4.19□□□□□ -1.74
PRPF40A-201ENST00000354363 CDC42SE1Q9NRR8 79 aa4.15□□□□□ -1.74
PRPF40A-201ENST00000354363 MUC5BQ9HC84 5762 aaPredicted RBP4.15□□□□□ -1.75
PRPF40A-201ENST00000354363 AHNAKQ09666 5890 aaKnown RBP4.14□□□□□ -1.75
PRPF40A-201ENST00000354363 MUC5ACP98088 5654 aa4.12□□□□□ -1.75
PRPF40A-201ENST00000354363 OBSCNQ5VST9 7968 aa4.09□□□□□ -1.75
PRPF40A-201ENST00000354363 A6NED7 52 aa4.09□□□□□ -1.76
PRPF40A-201ENST00000354363 KTN1-AS1Q86SY8 53 aa4.09□□□□□ -1.76
PRPF40A-201ENST00000354363 ROMO1P60602 79 aa4.07□□□□□ -1.76
PRPF40A-201ENST00000354363 MT3P25713 68 aa3.99□□□□□ -1.77
PRPF40A-201ENST00000354363 KRTAP5-1Q6L8H4 278 aa3.97□□□□□ -1.77
PRPF40A-201ENST00000354363 A0A0A0MQY5 61 aa3.78□□□□□ -1.8
PRPF40A-201ENST00000354363 LCE1EQ5T753 118 aa3.71□□□□□ -1.82
PRPF40A-201ENST00000354363 PRAC1Q96KF2 57 aa3.62□□□□□ -1.83
PRPF40A-201ENST00000354363 LCE1BQ5T7P3 118 aa3.52□□□□□ -1.85
PRPF40A-201ENST00000354363 KRTAP5-11Q6L8G4 156 aa3.51□□□□□ -1.85
PRPF40A-201ENST00000354363 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.51□□□□□ -1.85
PRPF40A-201ENST00000354363 LCE1CQ5T751 118 aa3.45□□□□□ -1.86
PRPF40A-201ENST00000354363 NDUFAF8A1L188 74 aa3.19□□□□□ -1.9
PRPF40A-201ENST00000354363 LCE3DQ9BYE3 92 aa3.14□□□□□ -1.91
PRPF40A-201ENST00000354363 LCE1FQ5T754 118 aa3.11□□□□□ -1.91
PRPF40A-201ENST00000354363 LUZP6Q538Z0 58 aa3.09□□□□□ -1.91
PRPF40A-201ENST00000354363 LCE3EQ5T5B0 92 aa2.92□□□□□ -1.94
PRPF40A-201ENST00000354363 KRTAP4-4Q9BYR3 166 aa2.91□□□□□ -1.94
PRPF40A-201ENST00000354363 PHGR1C9JFL3 82 aa2.9□□□□□ -1.95
PRPF40A-201ENST00000354363 KRTAP21-2Q3LI59 83 aa2.87□□□□□ -1.95
PRPF40A-201ENST00000354363 INE1O15225 51 aa2.8□□□□□ -1.96
PRPF40A-201ENST00000354363 MUC19Q7Z5P9 8384 aa2.55□□□□□ -2
PRPF40A-201ENST00000354363 KRTAP21-1Q3LI58 79 aa2.19□□□□□ -2.06
PRPF40A-201ENST00000354363 PRM1P04553 51 aa2.07□□□□□ -2.08
PRPF40A-201ENST00000354363 MUC16Q8WXI7 14507 aa1.86□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 189.9 ms