RNA–Protein interactions for RNA: ENST00000351948.8

SMC6-201, Transcript of structural maintenance of chromosomes 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC6, Length 5,173 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-201ENST00000351948 MT1EP04732 61 aa4.61□□□□□ -1.67
SMC6-201ENST00000351948 MT1LQ93083 61 aa4.6□□□□□ -1.67
SMC6-201ENST00000351948 LCE2DQ5TA82 110 aaPredicted RBP4.52□□□□□ -1.69
SMC6-201ENST00000351948 KRTAP4-3Q9BYR4 195 aa4.51□□□□□ -1.69
SMC6-201ENST00000351948 KRTAP12-4P60329 112 aa4.5□□□□□ -1.69
SMC6-201ENST00000351948 USH2AO75445 5202 aa4.48□□□□□ -1.69
SMC6-201ENST00000351948 KRTAP9-6A0A140TA67 174 aa4.47□□□□□ -1.69
SMC6-201ENST00000351948 SYNE2Q8WXH0 6885 aaKnown RBP4.45□□□□□ -1.7
SMC6-201ENST00000351948 LOC100996750A0A140TA64 210 aa4.44□□□□□ -1.7
SMC6-201ENST00000351948 MT1MQ8N339 61 aa4.44□□□□□ -1.7
SMC6-201ENST00000351948 SPRR5A0A1B0GTR4 108 aa4.44□□□□□ -1.7
SMC6-201ENST00000351948 KRTAP19-7Q3SYF9 63 aa4.4□□□□□ -1.7
SMC6-201ENST00000351948 OBSCNQ5VST9 7968 aa4.35□□□□□ -1.71
SMC6-201ENST00000351948 MT4P47944 62 aa4.35□□□□□ -1.71
SMC6-201ENST00000351948 KMT2DO14686 5537 aa4.3□□□□□ -1.72
SMC6-201ENST00000351948 DSTQ03001 7570 aaKnown RBP4.3□□□□□ -1.72
SMC6-201ENST00000351948 FCGBPQ9Y6R7 5405 aaPredicted RBP4.29□□□□□ -1.72
SMC6-201ENST00000351948 LCE3DQ9BYE3 92 aa4.27□□□□□ -1.73
SMC6-201ENST00000351948 KRTAP9-7A8MTY7 169 aa4.23□□□□□ -1.73
SMC6-201ENST00000351948 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.17□□□□□ -1.74
SMC6-201ENST00000351948 LCE3EQ5T5B0 92 aa4.15□□□□□ -1.74
SMC6-201ENST00000351948 MACF1Q9UPN3 7388 aaKnown RBP4.14□□□□□ -1.75
SMC6-201ENST00000351948 MT3P25713 68 aa4.08□□□□□ -1.76
SMC6-201ENST00000351948 SSPOA2VEC9 5147 aa4.08□□□□□ -1.76
SMC6-201ENST00000351948 KRTAP6-3Q3LI67 103 aa4.08□□□□□ -1.76
SMC6-201ENST00000351948 KRTAP4-9Q9BYQ8 210 aa4.06□□□□□ -1.76
SMC6-201ENST00000351948 MUC12Q9UKN1 5478 aa4.05□□□□□ -1.76
SMC6-201ENST00000351948 LCE1AQ5T7P2 110 aa4.05□□□□□ -1.76
SMC6-201ENST00000351948 KRTAP9-6A8MVA2 160 aa4.03□□□□□ -1.76
SMC6-201ENST00000351948 KRTAP20-1Q3LI63 56 aa4.01□□□□□ -1.77
SMC6-201ENST00000351948 LCE5AQ5TCM9 118 aa4.01□□□□□ -1.77
SMC6-201ENST00000351948 MT1AP04731 61 aa4□□□□□ -1.77
SMC6-201ENST00000351948 LCE1DQ5T752 114 aa3.97□□□□□ -1.77
SMC6-201ENST00000351948 LCE1BQ5T7P3 118 aa3.95□□□□□ -1.78
SMC6-201ENST00000351948 KRTAP2-3P0C7H8 128 aa3.94□□□□□ -1.78
SMC6-201ENST00000351948 KRTAP2-4Q9BYR9 128 aa3.94□□□□□ -1.78
SMC6-201ENST00000351948 KRTAP2-1Q9BYU5 128 aa3.94□□□□□ -1.78
SMC6-201ENST00000351948 KRTAP6-1Q3LI64 71 aa3.92□□□□□ -1.78
SMC6-201ENST00000351948 KRTAP6-2Q3LI66 62 aa3.83□□□□□ -1.8
SMC6-201ENST00000351948 PRM1P04553 51 aa3.81□□□□□ -1.8
SMC6-201ENST00000351948 KRTAP2-2Q9BYT5 123 aa3.78□□□□□ -1.8
SMC6-201ENST00000351948 MDN1Q9NU22 5596 aa3.78□□□□□ -1.8
SMC6-201ENST00000351948 NEBP20929 6669 aa3.74□□□□□ -1.81
SMC6-201ENST00000351948 KRTAP9-4Q9BYQ2 154 aa3.72□□□□□ -1.81
SMC6-201ENST00000351948 LCE4AQ5TA78 99 aa3.68□□□□□ -1.82
SMC6-201ENST00000351948 KRTAP5-9P26371 169 aa3.65□□□□□ -1.83
SMC6-201ENST00000351948 KRTAP4-6Q9BYQ5 205 aa3.5□□□□□ -1.85
SMC6-201ENST00000351948 KRTAP20-2Q3LI61 65 aa3.31□□□□□ -1.88
SMC6-201ENST00000351948 GPR98Q8WXG9 6306 aa3.28□□□□□ -1.88
SMC6-201ENST00000351948 MUC19Q7Z5P9 8384 aa3.25□□□□□ -1.89
SMC6-201ENST00000351948 LCE1CQ5T751 118 aa3.25□□□□□ -1.89
SMC6-201ENST00000351948 LCE1EQ5T753 118 aa3.25□□□□□ -1.89
SMC6-201ENST00000351948 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
SMC6-201ENST00000351948 KRTAP9-9Q9BYP9 154 aa3.15□□□□□ -1.9
SMC6-201ENST00000351948 MUC5ACP98088 5654 aa3.06□□□□□ -1.92
SMC6-201ENST00000351948 KRTAP5-5Q701N2 237 aaPredicted RBP3.06□□□□□ -1.92
SMC6-201ENST00000351948 KRTAP5-4Q6L8H1 288 aa3.03□□□□□ -1.92
SMC6-201ENST00000351948 KRTAP4-11Q9BYQ6 195 aa2.99□□□□□ -1.93
SMC6-201ENST00000351948 KRTAP4-12Q9BQ66 201 aa2.95□□□□□ -1.94
SMC6-201ENST00000351948 KRTAP4-2Q9BYR5 136 aa2.95□□□□□ -1.94
SMC6-201ENST00000351948 HMCN1Q96RW7 5635 aa2.92□□□□□ -1.94
SMC6-201ENST00000351948 KRTAP4-4Q9BYR3 166 aa2.91□□□□□ -1.94
SMC6-201ENST00000351948 KRTAP5-3Q6L8H2 238 aa2.82□□□□□ -1.96
SMC6-201ENST00000351948 AHNAK2Q8IVF2 5795 aa2.76□□□□□ -1.97
SMC6-201ENST00000351948 KRTAP5-8O75690 187 aa2.61□□□□□ -1.99
SMC6-201ENST00000351948 KRTAP5-2Q701N4 177 aa2.53□□□□□ -2
SMC6-201ENST00000351948 AHNAKQ09666 5890 aaKnown RBP2.38□□□□□ -2.03
SMC6-201ENST00000351948 KRTAP5-10Q6L8G5 202 aa2.32□□□□□ -2.04
SMC6-201ENST00000351948 KRTAP5-1Q6L8H4 278 aa2.3□□□□□ -2.04
SMC6-201ENST00000351948 MUC5BQ9HC84 5762 aaPredicted RBP2.3□□□□□ -2.04
SMC6-201ENST00000351948 KRTAP5-11Q6L8G4 156 aa2.13□□□□□ -2.07
SMC6-201ENST00000351948 PHGR1C9JFL3 82 aa2.12□□□□□ -2.07
SMC6-201ENST00000351948 KRTAP21-2Q3LI59 83 aa2.1□□□□□ -2.07
SMC6-201ENST00000351948 KRTAP5-7Q6L8G8 165 aa1.94□□□□□ -2.1
SMC6-201ENST00000351948 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.9□□□□□ -2.1
SMC6-201ENST00000351948 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
SMC6-201ENST00000351948 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 77.4 ms