RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 KRTAP9-2Q9BYQ4 174 aa5.18□□□□□ -1.58
UPF3B-202ENST00000345865 KRTAP9-6A0A140TA67 174 aa5.17□□□□□ -1.58
UPF3B-202ENST00000345865 KRTAP2-3P0C7H8 128 aa5.16□□□□□ -1.58
UPF3B-202ENST00000345865 KRTAP4-3Q9BYR4 195 aa5.16□□□□□ -1.58
UPF3B-202ENST00000345865 KRTAP2-4Q9BYR9 128 aa5.16□□□□□ -1.58
UPF3B-202ENST00000345865 KRTAP2-1Q9BYU5 128 aa5.16□□□□□ -1.58
UPF3B-202ENST00000345865 LOC100996750A0A140TA64 210 aa5.1□□□□□ -1.59
UPF3B-202ENST00000345865 KRTAP19-3Q7Z4W3 81 aa5.08□□□□□ -1.6
UPF3B-202ENST00000345865 MT1MQ8N339 61 aa5.07□□□□□ -1.6
UPF3B-202ENST00000345865 MACF1Q9UPN3 7388 aaKnown RBP5.07□□□□□ -1.6
UPF3B-202ENST00000345865 MT1GP13640 62 aa5.05□□□□□ -1.6
UPF3B-202ENST00000345865 DSTQ03001 7570 aaKnown RBP5.01□□□□□ -1.61
UPF3B-202ENST00000345865 SPRR2FQ96RM1 72 aa4.97□□□□□ -1.61
UPF3B-202ENST00000345865 LCE5AQ5TCM9 118 aa4.95□□□□□ -1.62
UPF3B-202ENST00000345865 CRCT1Q9UGL9 99 aa4.9□□□□□ -1.63
UPF3B-202ENST00000345865 SYNE2Q8WXH0 6885 aaKnown RBP4.89□□□□□ -1.63
UPF3B-202ENST00000345865 MDN1Q9NU22 5596 aa4.86□□□□□ -1.63
UPF3B-202ENST00000345865 KRTAP5-9P26371 169 aa4.69□□□□□ -1.66
UPF3B-202ENST00000345865 LCE1AQ5T7P2 110 aa4.68□□□□□ -1.66
UPF3B-202ENST00000345865 LCE3BQ5TA77 95 aa4.6□□□□□ -1.67
UPF3B-202ENST00000345865 KRTAP9-7A8MTY7 169 aa4.6□□□□□ -1.67
UPF3B-202ENST00000345865 KRTAP6-1Q3LI64 71 aa4.6□□□□□ -1.67
UPF3B-202ENST00000345865 SYNE1Q8NF91 8797 aaKnown RBP4.58□□□□□ -1.68
UPF3B-202ENST00000345865 SPRR2EP22531 72 aa4.55□□□□□ -1.68
UPF3B-202ENST00000345865 SPRR2BP35325 72 aa4.55□□□□□ -1.68
UPF3B-202ENST00000345865 SPRR2AP35326 72 aa4.55□□□□□ -1.68
UPF3B-202ENST00000345865 KRTAP5-5Q701N2 237 aaPredicted RBP4.52□□□□□ -1.69
UPF3B-202ENST00000345865 KRTAP4-9Q9BYQ8 210 aa4.52□□□□□ -1.69
UPF3B-202ENST00000345865 MT1AP04731 61 aa4.52□□□□□ -1.69
UPF3B-202ENST00000345865 KRTAP12-4P60329 112 aa4.52□□□□□ -1.69
UPF3B-202ENST00000345865 KRTAP4-6Q9BYQ5 205 aa4.52□□□□□ -1.69
UPF3B-202ENST00000345865 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.51□□□□□ -1.69
UPF3B-202ENST00000345865 SPRR2DP22532 72 aa4.35□□□□□ -1.71
UPF3B-202ENST00000345865 KRTAP6-3Q3LI67 103 aa4.32□□□□□ -1.72
UPF3B-202ENST00000345865 LCE3DQ9BYE3 92 aa4.28□□□□□ -1.72
UPF3B-202ENST00000345865 KRTAP9-4Q9BYQ2 154 aa4.28□□□□□ -1.72
UPF3B-202ENST00000345865 LCE3EQ5T5B0 92 aa4.21□□□□□ -1.74
UPF3B-202ENST00000345865 OBSCNQ5VST9 7968 aa4.16□□□□□ -1.74
UPF3B-202ENST00000345865 KRTAP6-2Q3LI66 62 aa4.13□□□□□ -1.75
UPF3B-202ENST00000345865 NEBP20929 6669 aa4.09□□□□□ -1.75
UPF3B-202ENST00000345865 MT3P25713 68 aa4.05□□□□□ -1.76
UPF3B-202ENST00000345865 KRTAP5-4Q6L8H1 288 aa4.04□□□□□ -1.76
UPF3B-202ENST00000345865 KRTAP20-1Q3LI63 56 aa4.01□□□□□ -1.77
UPF3B-202ENST00000345865 PRM1P04553 51 aa3.98□□□□□ -1.77
UPF3B-202ENST00000345865 KRTAP5-3Q6L8H2 238 aa3.87□□□□□ -1.79
UPF3B-202ENST00000345865 MT4P47944 62 aa3.86□□□□□ -1.79
UPF3B-202ENST00000345865 KRTAP20-2Q3LI61 65 aa3.79□□□□□ -1.8
UPF3B-202ENST00000345865 HMCN1Q96RW7 5635 aa3.77□□□□□ -1.81
UPF3B-202ENST00000345865 LCE4AQ5TA78 99 aa3.77□□□□□ -1.81
UPF3B-202ENST00000345865 KRTAP5-2Q701N4 177 aa3.75□□□□□ -1.81
UPF3B-202ENST00000345865 LCE1DQ5T752 114 aa3.66□□□□□ -1.82
UPF3B-202ENST00000345865 KRTAP2-2Q9BYT5 123 aa3.65□□□□□ -1.83
UPF3B-202ENST00000345865 GPR98Q8WXG9 6306 aa3.61□□□□□ -1.83
UPF3B-202ENST00000345865 MUC5ACP98088 5654 aa3.49□□□□□ -1.85
UPF3B-202ENST00000345865 KRTAP4-2Q9BYR5 136 aa3.39□□□□□ -1.87
UPF3B-202ENST00000345865 LCE1EQ5T753 118 aa3.36□□□□□ -1.87
UPF3B-202ENST00000345865 KRTAP9-9Q9BYP9 154 aa3.35□□□□□ -1.87
UPF3B-202ENST00000345865 LCE1BQ5T7P3 118 aa3.3□□□□□ -1.88
UPF3B-202ENST00000345865 KRTAP5-10Q6L8G5 202 aa3.22□□□□□ -1.89
UPF3B-202ENST00000345865 KRTAP5-1Q6L8H4 278 aa3.22□□□□□ -1.89
UPF3B-202ENST00000345865 KRTAP4-12Q9BQ66 201 aa3.18□□□□□ -1.9
UPF3B-202ENST00000345865 LCE1CQ5T751 118 aa3.18□□□□□ -1.9
UPF3B-202ENST00000345865 KRTAP4-11Q9BYQ6 195 aa3.16□□□□□ -1.9
UPF3B-202ENST00000345865 KRTAP5-7Q6L8G8 165 aa3.12□□□□□ -1.91
UPF3B-202ENST00000345865 AHNAK2Q8IVF2 5795 aa3.11□□□□□ -1.91
UPF3B-202ENST00000345865 KRTAP5-8O75690 187 aa3.04□□□□□ -1.92
UPF3B-202ENST00000345865 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.99□□□□□ -1.93
UPF3B-202ENST00000345865 KRTAP21-2Q3LI59 83 aa2.98□□□□□ -1.93
UPF3B-202ENST00000345865 AHNAKQ09666 5890 aaKnown RBP2.82□□□□□ -1.96
UPF3B-202ENST00000345865 MUC5BQ9HC84 5762 aaPredicted RBP2.78□□□□□ -1.96
UPF3B-202ENST00000345865 KRTAP5-11Q6L8G4 156 aa2.74□□□□□ -1.97
UPF3B-202ENST00000345865 KRTAP4-4Q9BYR3 166 aa2.73□□□□□ -1.97
UPF3B-202ENST00000345865 LCE1FQ5T754 118 aa2.61□□□□□ -1.99
UPF3B-202ENST00000345865 MUC19Q7Z5P9 8384 aa2.56□□□□□ -2
UPF3B-202ENST00000345865 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
UPF3B-202ENST00000345865 PHGR1C9JFL3 82 aa2.38□□□□□ -2.03
UPF3B-202ENST00000345865 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 121 ms