RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 MT1BP07438 61 aa3.88□□□□□ -1.79
ATG4A-202ENST00000345734 SPRR5A0A1B0GTR4 108 aa3.87□□□□□ -1.79
ATG4A-202ENST00000345734 KRTAP10-5P60370 271 aa3.87□□□□□ -1.79
ATG4A-202ENST00000345734 LCE3EQ5T5B0 92 aa3.82□□□□□ -1.8
ATG4A-202ENST00000345734 USH2AO75445 5202 aa3.81□□□□□ -1.8
ATG4A-202ENST00000345734 TNP1P09430 55 aa3.8□□□□□ -1.8
ATG4A-202ENST00000345734 MT1XP80297 61 aa3.79□□□□□ -1.8
ATG4A-202ENST00000345734 KRTAP10-7P60409 375 aaPredicted RBP3.79□□□□□ -1.8
ATG4A-202ENST00000345734 LCE1EQ5T753 118 aa3.7□□□□□ -1.82
ATG4A-202ENST00000345734 SSPOA2VEC9 5147 aa3.67□□□□□ -1.82
ATG4A-202ENST00000345734 LCE3AQ5TA76 89 aa3.67□□□□□ -1.82
ATG4A-202ENST00000345734 FSIP2Q5CZC0 6907 aa3.62□□□□□ -1.83
ATG4A-202ENST00000345734 KMT2DO14686 5537 aa3.62□□□□□ -1.83
ATG4A-202ENST00000345734 KRTAP8-1Q8IUC2 63 aa3.55□□□□□ -1.84
ATG4A-202ENST00000345734 KRTAP5-11Q6L8G4 156 aa3.55□□□□□ -1.84
ATG4A-202ENST00000345734 KRTAP19-6Q3LI70 58 aa3.51□□□□□ -1.85
ATG4A-202ENST00000345734 KRTAP9-6A8MVA2 160 aa3.49□□□□□ -1.85
ATG4A-202ENST00000345734 KRTAP12-3P60328 96 aa3.49□□□□□ -1.85
ATG4A-202ENST00000345734 FCGBPQ9Y6R7 5405 aaPredicted RBP3.47□□□□□ -1.85
ATG4A-202ENST00000345734 KRTAP19-5Q3LI72 72 aa3.46□□□□□ -1.86
ATG4A-202ENST00000345734 KRTAP19-7Q3SYF9 63 aa3.38□□□□□ -1.87
ATG4A-202ENST00000345734 CRCT1Q9UGL9 99 aa3.34□□□□□ -1.87
ATG4A-202ENST00000345734 GPR98Q8WXG9 6306 aa3.32□□□□□ -1.88
ATG4A-202ENST00000345734 MT1EP04732 61 aa3.31□□□□□ -1.88
ATG4A-202ENST00000345734 MUC12Q9UKN1 5478 aa3.3□□□□□ -1.88
ATG4A-202ENST00000345734 MACF1Q9UPN3 7388 aaKnown RBP3.29□□□□□ -1.88
ATG4A-202ENST00000345734 LCE3DQ9BYE3 92 aa3.28□□□□□ -1.88
ATG4A-202ENST00000345734 MT1LQ93083 61 aa3.25□□□□□ -1.89
ATG4A-202ENST00000345734 SYNE2Q8WXH0 6885 aaKnown RBP3.23□□□□□ -1.89
ATG4A-202ENST00000345734 SPRR2FQ96RM1 72 aa3.17□□□□□ -1.9
ATG4A-202ENST00000345734 KRTAP19-3Q7Z4W3 81 aa3.14□□□□□ -1.91
ATG4A-202ENST00000345734 MDN1Q9NU22 5596 aa3.14□□□□□ -1.91
ATG4A-202ENST00000345734 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.11□□□□□ -1.91
ATG4A-202ENST00000345734 MT1MQ8N339 61 aa3.11□□□□□ -1.91
ATG4A-202ENST00000345734 KRTAP4-3Q9BYR4 195 aa3.11□□□□□ -1.91
ATG4A-202ENST00000345734 MT1GP13640 62 aa3.1□□□□□ -1.91
ATG4A-202ENST00000345734 KRTAP5-9P26371 169 aa3.05□□□□□ -1.92
ATG4A-202ENST00000345734 DSTQ03001 7570 aaKnown RBP3.03□□□□□ -1.92
ATG4A-202ENST00000345734 NEBP20929 6669 aa3.03□□□□□ -1.92
ATG4A-202ENST00000345734 KRTAP20-1Q3LI63 56 aa3.01□□□□□ -1.93
ATG4A-202ENST00000345734 KRTAP2-3P0C7H8 128 aa2.98□□□□□ -1.93
ATG4A-202ENST00000345734 KRTAP2-4Q9BYR9 128 aa2.98□□□□□ -1.93
ATG4A-202ENST00000345734 KRTAP2-1Q9BYU5 128 aa2.98□□□□□ -1.93
ATG4A-202ENST00000345734 SPRR2EP22531 72 aa2.96□□□□□ -1.93
ATG4A-202ENST00000345734 SPRR2BP35325 72 aa2.96□□□□□ -1.93
ATG4A-202ENST00000345734 SPRR2AP35326 72 aa2.96□□□□□ -1.93
ATG4A-202ENST00000345734 KRTAP6-3Q3LI67 103 aa2.95□□□□□ -1.94
ATG4A-202ENST00000345734 HMCN1Q96RW7 5635 aa2.92□□□□□ -1.94
ATG4A-202ENST00000345734 KRTAP5-1Q6L8H4 278 aa2.91□□□□□ -1.94
ATG4A-202ENST00000345734 SPRR2DP22532 72 aa2.85□□□□□ -1.95
ATG4A-202ENST00000345734 KRTAP5-5Q701N2 237 aaPredicted RBP2.78□□□□□ -1.96
ATG4A-202ENST00000345734 KRTAP6-1Q3LI64 71 aa2.76□□□□□ -1.97
ATG4A-202ENST00000345734 SYNE1Q8NF91 8797 aaKnown RBP2.75□□□□□ -1.97
ATG4A-202ENST00000345734 MT1AP04731 61 aa2.74□□□□□ -1.97
ATG4A-202ENST00000345734 OBSCNQ5VST9 7968 aa2.7□□□□□ -1.98
ATG4A-202ENST00000345734 KRTAP12-4P60329 112 aa2.69□□□□□ -1.98
ATG4A-202ENST00000345734 MUC5BQ9HC84 5762 aaPredicted RBP2.68□□□□□ -1.98
ATG4A-202ENST00000345734 KRTAP4-4Q9BYR3 166 aa2.67□□□□□ -1.98
ATG4A-202ENST00000345734 AHNAK2Q8IVF2 5795 aa2.64□□□□□ -1.99
ATG4A-202ENST00000345734 KRTAP5-4Q6L8H1 288 aa2.62□□□□□ -1.99
ATG4A-202ENST00000345734 AHNAKQ09666 5890 aaKnown RBP2.62□□□□□ -1.99
ATG4A-202ENST00000345734 KRTAP5-7Q6L8G8 165 aa2.59□□□□□ -2
ATG4A-202ENST00000345734 KRTAP6-2Q3LI66 62 aa2.52□□□□□ -2.01
ATG4A-202ENST00000345734 MT4P47944 62 aa2.51□□□□□ -2.01
ATG4A-202ENST00000345734 LCE1CQ5T751 118 aa2.5□□□□□ -2.01
ATG4A-202ENST00000345734 LCE1BQ5T7P3 118 aa2.5□□□□□ -2.01
ATG4A-202ENST00000345734 PRM1P04553 51 aa2.45□□□□□ -2.02
ATG4A-202ENST00000345734 KRTAP20-2Q3LI61 65 aa2.43□□□□□ -2.02
ATG4A-202ENST00000345734 KRTAP5-10Q6L8G5 202 aa2.42□□□□□ -2.02
ATG4A-202ENST00000345734 KRTAP5-2Q701N4 177 aa2.42□□□□□ -2.02
ATG4A-202ENST00000345734 KRTAP5-8O75690 187 aa2.29□□□□□ -2.04
ATG4A-202ENST00000345734 MUC5ACP98088 5654 aa2.22□□□□□ -2.05
ATG4A-202ENST00000345734 MUC19Q7Z5P9 8384 aa2.07□□□□□ -2.08
ATG4A-202ENST00000345734 KRTAP21-2Q3LI59 83 aa1.79□□□□□ -2.12
ATG4A-202ENST00000345734 KRTAP21-1Q3LI58 79 aa1.68□□□□□ -2.14
ATG4A-202ENST00000345734 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
ATG4A-202ENST00000345734 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 76.4 ms