RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DSTQ03001 7570 aaKnown RBP3.61□□□□□ -1.83
LIMA1-201ENST00000341247 SYNE2Q8WXH0 6885 aaKnown RBP3.61□□□□□ -1.83
LIMA1-201ENST00000341247 MT1LQ93083 61 aa3.6□□□□□ -1.83
LIMA1-201ENST00000341247 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.59□□□□□ -1.83
LIMA1-201ENST00000341247 KRTAP9-2Q9BYQ4 174 aa3.59□□□□□ -1.84
LIMA1-201ENST00000341247 MDN1Q9NU22 5596 aa3.55□□□□□ -1.84
LIMA1-201ENST00000341247 KRTAP9-6A0A140TA67 174 aa3.54□□□□□ -1.84
LIMA1-201ENST00000341247 KRTAP4-3Q9BYR4 195 aa3.53□□□□□ -1.84
LIMA1-201ENST00000341247 KRTAP4-12Q9BQ66 201 aa3.52□□□□□ -1.85
LIMA1-201ENST00000341247 CRCT1Q9UGL9 99 aa3.47□□□□□ -1.85
LIMA1-201ENST00000341247 MT1GP13640 62 aa3.44□□□□□ -1.86
LIMA1-201ENST00000341247 SPRR2FQ96RM1 72 aa3.43□□□□□ -1.86
LIMA1-201ENST00000341247 KRTAP9-9Q9BYP9 154 aa3.43□□□□□ -1.86
LIMA1-201ENST00000341247 KRTAP9-4Q9BYQ2 154 aa3.43□□□□□ -1.86
LIMA1-201ENST00000341247 HMCN1Q96RW7 5635 aa3.42□□□□□ -1.86
LIMA1-201ENST00000341247 KRTAP19-3Q7Z4W3 81 aa3.41□□□□□ -1.86
LIMA1-201ENST00000341247 INE1O15225 51 aa3.4□□□□□ -1.86
LIMA1-201ENST00000341247 MT1MQ8N339 61 aa3.4□□□□□ -1.87
LIMA1-201ENST00000341247 KRTAP2-3P0C7H8 128 aa3.37□□□□□ -1.87
LIMA1-201ENST00000341247 KRTAP2-4Q9BYR9 128 aa3.37□□□□□ -1.87
LIMA1-201ENST00000341247 KRTAP2-1Q9BYU5 128 aa3.37□□□□□ -1.87
LIMA1-201ENST00000341247 KRTAP19-4Q3LI73 84 aa3.36□□□□□ -1.87
LIMA1-201ENST00000341247 LCE3BQ5TA77 95 aa3.31□□□□□ -1.88
LIMA1-201ENST00000341247 LCE5AQ5TCM9 118 aa3.31□□□□□ -1.88
LIMA1-201ENST00000341247 KRTAP4-9Q9BYQ8 210 aa3.26□□□□□ -1.89
LIMA1-201ENST00000341247 SYNE1Q8NF91 8797 aaKnown RBP3.25□□□□□ -1.89
LIMA1-201ENST00000341247 LCE1DQ5T752 114 aa3.23□□□□□ -1.89
LIMA1-201ENST00000341247 KRTAP4-2Q9BYR5 136 aa3.23□□□□□ -1.89
LIMA1-201ENST00000341247 LCE1AQ5T7P2 110 aa3.19□□□□□ -1.9
LIMA1-201ENST00000341247 KRTAP5-9P26371 169 aa3.17□□□□□ -1.9
LIMA1-201ENST00000341247 SPRR2EP22531 72 aa3.13□□□□□ -1.91
LIMA1-201ENST00000341247 SPRR2BP35325 72 aa3.13□□□□□ -1.91
LIMA1-201ENST00000341247 SPRR2AP35326 72 aa3.13□□□□□ -1.91
LIMA1-201ENST00000341247 KRTAP6-1Q3LI64 71 aa3.09□□□□□ -1.91
LIMA1-201ENST00000341247 OBSCNQ5VST9 7968 aa3.06□□□□□ -1.92
LIMA1-201ENST00000341247 KRTAP12-4P60329 112 aa3.06□□□□□ -1.92
LIMA1-201ENST00000341247 KRTAP4-11Q9BYQ6 195 aa3.06□□□□□ -1.92
LIMA1-201ENST00000341247 MUC5BQ9HC84 5762 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-201ENST00000341247 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-201ENST00000341247 KRTAP5-3Q6L8H2 238 aa3□□□□□ -1.93
LIMA1-201ENST00000341247 MT1AP04731 61 aa3□□□□□ -1.93
LIMA1-201ENST00000341247 SPRR2DP22532 72 aa2.99□□□□□ -1.93
LIMA1-201ENST00000341247 KRTAP6-3Q3LI67 103 aa2.93□□□□□ -1.94
LIMA1-201ENST00000341247 NEBP20929 6669 aa2.92□□□□□ -1.94
LIMA1-201ENST00000341247 LCE3DQ9BYE3 92 aa2.89□□□□□ -1.95
LIMA1-201ENST00000341247 LCE3EQ5T5B0 92 aa2.82□□□□□ -1.96
LIMA1-201ENST00000341247 KRTAP6-2Q3LI66 62 aa2.81□□□□□ -1.96
LIMA1-201ENST00000341247 KRTAP9-7A8MTY7 169 aa2.78□□□□□ -1.97
LIMA1-201ENST00000341247 MT3P25713 68 aa2.71□□□□□ -1.97
LIMA1-201ENST00000341247 KRTAP5-4Q6L8H1 288 aa2.71□□□□□ -1.98
LIMA1-201ENST00000341247 MT4P47944 62 aa2.71□□□□□ -1.98
LIMA1-201ENST00000341247 PRM1P04553 51 aa2.7□□□□□ -1.98
LIMA1-201ENST00000341247 LCE4AQ5TA78 99 aa2.7□□□□□ -1.98
LIMA1-201ENST00000341247 KRTAP20-2Q3LI61 65 aa2.56□□□□□ -2
LIMA1-201ENST00000341247 KRTAP5-2Q701N4 177 aa2.51□□□□□ -2.01
LIMA1-201ENST00000341247 KRTAP2-2Q9BYT5 123 aa2.46□□□□□ -2.02
LIMA1-201ENST00000341247 GPR98Q8WXG9 6306 aa2.4□□□□□ -2.02
LIMA1-201ENST00000341247 MUC5ACP98088 5654 aa2.39□□□□□ -2.03
LIMA1-201ENST00000341247 KRTAP20-1Q3LI63 56 aa2.39□□□□□ -2.03
LIMA1-201ENST00000341247 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.38□□□□□ -2.03
LIMA1-201ENST00000341247 LCE1BQ5T7P3 118 aa2.33□□□□□ -2.04
LIMA1-201ENST00000341247 KRTAP5-1Q6L8H4 278 aa2.2□□□□□ -2.06
LIMA1-201ENST00000341247 AHNAK2Q8IVF2 5795 aa2.18□□□□□ -2.06
LIMA1-201ENST00000341247 LCE1EQ5T753 118 aa2.17□□□□□ -2.06
LIMA1-201ENST00000341247 KRTAP5-10Q6L8G5 202 aa2.14□□□□□ -2.07
LIMA1-201ENST00000341247 KRTAP5-8O75690 187 aa2.1□□□□□ -2.07
LIMA1-201ENST00000341247 LCE1CQ5T751 118 aa2.08□□□□□ -2.08
LIMA1-201ENST00000341247 KRTAP5-11Q6L8G4 156 aa2.06□□□□□ -2.08
LIMA1-201ENST00000341247 AHNAKQ09666 5890 aaKnown RBP2.03□□□□□ -2.08
LIMA1-201ENST00000341247 KRTAP4-4Q9BYR3 166 aa2.01□□□□□ -2.09
LIMA1-201ENST00000341247 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
LIMA1-201ENST00000341247 KRTAP5-7Q6L8G8 165 aa1.97□□□□□ -2.09
LIMA1-201ENST00000341247 MUC19Q7Z5P9 8384 aa1.91□□□□□ -2.1
LIMA1-201ENST00000341247 LCE1FQ5T754 118 aa1.62□□□□□ -2.15
LIMA1-201ENST00000341247 KRTAP21-1Q3LI58 79 aa1.59□□□□□ -2.15
LIMA1-201ENST00000341247 PHGR1C9JFL3 82 aa1.58□□□□□ -2.16
LIMA1-201ENST00000341247 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 67.6 ms