RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 KRTAP9-6A8MVA2 160 aa2.07□□□□□ -2.08
CSDE1-202ENST00000339438 KRTAP2-3P0C7H8 128 aa2.07□□□□□ -2.08
CSDE1-202ENST00000339438 KRTAP2-4Q9BYR9 128 aa2.07□□□□□ -2.08
CSDE1-202ENST00000339438 KRTAP2-1Q9BYU5 128 aa2.07□□□□□ -2.08
CSDE1-202ENST00000339438 KRTAP10-7P60409 375 aaPredicted RBP2.03□□□□□ -2.08
CSDE1-202ENST00000339438 LCE1AQ5T7P2 110 aa2.03□□□□□ -2.08
CSDE1-202ENST00000339438 KRTAP19-7Q3SYF9 63 aa2.03□□□□□ -2.08
CSDE1-202ENST00000339438 LCE3CQ5T5A8 94 aa2.02□□□□□ -2.09
CSDE1-202ENST00000339438 KRTAP4-8A0A0G2JLE6 195 aa2.01□□□□□ -2.09
CSDE1-202ENST00000339438 KRTAP4-8Q9BYQ9 185 aa2.01□□□□□ -2.09
CSDE1-202ENST00000339438 LOC100996750A0A140TA64 210 aa2.01□□□□□ -2.09
CSDE1-202ENST00000339438 KRTAP4-6Q9BYQ5 205 aa2.01□□□□□ -2.09
CSDE1-202ENST00000339438 KRTAP5-4Q6L8H1 288 aa1.98□□□□□ -2.09
CSDE1-202ENST00000339438 KRTAP5-5Q701N2 237 aaPredicted RBP1.98□□□□□ -2.09
CSDE1-202ENST00000339438 LCE5AQ5TCM9 118 aa1.98□□□□□ -2.09
CSDE1-202ENST00000339438 KRTAP20-1Q3LI63 56 aa1.96□□□□□ -2.1
CSDE1-202ENST00000339438 KRTAP19-5Q3LI72 72 aa1.95□□□□□ -2.1
CSDE1-202ENST00000339438 DSTQ03001 7570 aaKnown RBP1.92□□□□□ -2.1
CSDE1-202ENST00000339438 MT1EP04732 61 aa1.9□□□□□ -2.11
CSDE1-202ENST00000339438 KRTAP4-7Q9BYR0 210 aa1.89□□□□□ -2.11
CSDE1-202ENST00000339438 KRTAP5-10Q6L8G5 202 aa1.88□□□□□ -2.11
CSDE1-202ENST00000339438 KRTAP19-4Q3LI73 84 aa1.88□□□□□ -2.11
CSDE1-202ENST00000339438 SPRR2FQ96RM1 72 aa1.86□□□□□ -2.11
CSDE1-202ENST00000339438 KRTAP2-2Q9BYT5 123 aa1.86□□□□□ -2.11
CSDE1-202ENST00000339438 AHNAK2Q8IVF2 5795 aa1.84□□□□□ -2.11
CSDE1-202ENST00000339438 KRTAP5-7Q6L8G8 165 aa1.83□□□□□ -2.12
CSDE1-202ENST00000339438 HMCN1Q96RW7 5635 aa1.81□□□□□ -2.12
CSDE1-202ENST00000339438 KRTAP5-3Q6L8H2 238 aa1.81□□□□□ -2.12
CSDE1-202ENST00000339438 KRTAP12-4P60329 112 aa1.81□□□□□ -2.12
CSDE1-202ENST00000339438 MT1LQ93083 61 aa1.8□□□□□ -2.12
CSDE1-202ENST00000339438 KRTAP5-2Q701N4 177 aa1.8□□□□□ -2.12
CSDE1-202ENST00000339438 KRTAP4-3Q9BYR4 195 aa1.79□□□□□ -2.12
CSDE1-202ENST00000339438 KRTAP19-3Q7Z4W3 81 aa1.78□□□□□ -2.12
CSDE1-202ENST00000339438 SYNE1Q8NF91 8797 aaKnown RBP1.77□□□□□ -2.13
CSDE1-202ENST00000339438 MT1MQ8N339 61 aa1.76□□□□□ -2.13
CSDE1-202ENST00000339438 OBSCNQ5VST9 7968 aa1.75□□□□□ -2.13
CSDE1-202ENST00000339438 SPRR2EP22531 72 aa1.74□□□□□ -2.13
CSDE1-202ENST00000339438 SPRR2BP35325 72 aa1.74□□□□□ -2.13
CSDE1-202ENST00000339438 SPRR2AP35326 72 aa1.74□□□□□ -2.13
CSDE1-202ENST00000339438 MT1GP13640 62 aa1.72□□□□□ -2.13
CSDE1-202ENST00000339438 KRTAP4-12Q9BQ66 201 aa1.72□□□□□ -2.13
CSDE1-202ENST00000339438 LCE3BQ5TA77 95 aa1.71□□□□□ -2.14
CSDE1-202ENST00000339438 LCE1EQ5T753 118 aa1.69□□□□□ -2.14
CSDE1-202ENST00000339438 LCE1DQ5T752 114 aa1.67□□□□□ -2.14
CSDE1-202ENST00000339438 SPRR2DP22532 72 aa1.66□□□□□ -2.14
CSDE1-202ENST00000339438 KRTAP4-9Q9BYQ8 210 aa1.66□□□□□ -2.14
CSDE1-202ENST00000339438 MT3P25713 68 aa1.66□□□□□ -2.14
CSDE1-202ENST00000339438 MUC5BQ9HC84 5762 aaPredicted RBP1.65□□□□□ -2.15
CSDE1-202ENST00000339438 MT1AP04731 61 aa1.64□□□□□ -2.15
CSDE1-202ENST00000339438 PRM1P04553 51 aa1.64□□□□□ -2.15
CSDE1-202ENST00000339438 LCE4AQ5TA78 99 aa1.64□□□□□ -2.15
CSDE1-202ENST00000339438 KRTAP9-9Q9BYP9 154 aa1.64□□□□□ -2.15
CSDE1-202ENST00000339438 KRTAP9-4Q9BYQ2 154 aa1.64□□□□□ -2.15
CSDE1-202ENST00000339438 KRTAP20-2Q3LI61 65 aa1.62□□□□□ -2.15
CSDE1-202ENST00000339438 GPR98Q8WXG9 6306 aa1.6□□□□□ -2.15
CSDE1-202ENST00000339438 MUC5ACP98088 5654 aa1.59□□□□□ -2.16
CSDE1-202ENST00000339438 KRTAP5-8O75690 187 aa1.56□□□□□ -2.16
CSDE1-202ENST00000339438 LCE3EQ5T5B0 92 aa1.56□□□□□ -2.16
CSDE1-202ENST00000339438 AHNAKQ09666 5890 aaKnown RBP1.55□□□□□ -2.16
CSDE1-202ENST00000339438 LCE3DQ9BYE3 92 aa1.55□□□□□ -2.16
CSDE1-202ENST00000339438 KRTAP5-1Q6L8H4 278 aa1.55□□□□□ -2.16
CSDE1-202ENST00000339438 MT4P47944 62 aa1.53□□□□□ -2.16
CSDE1-202ENST00000339438 KRTAP6-1Q3LI64 71 aa1.53□□□□□ -2.17
CSDE1-202ENST00000339438 KRTAP6-2Q3LI66 62 aa1.53□□□□□ -2.17
CSDE1-202ENST00000339438 LCE1FQ5T754 118 aa1.53□□□□□ -2.17
CSDE1-202ENST00000339438 KRTAP4-2Q9BYR5 136 aa1.52□□□□□ -2.17
CSDE1-202ENST00000339438 KRTAP4-11Q9BYQ6 195 aa1.51□□□□□ -2.17
CSDE1-202ENST00000339438 MUC19Q7Z5P9 8384 aa1.48□□□□□ -2.17
CSDE1-202ENST00000339438 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.36□□□□□ -2.19
CSDE1-202ENST00000339438 LCE1CQ5T751 118 aa1.3□□□□□ -2.2
CSDE1-202ENST00000339438 LCE1BQ5T7P3 118 aa1.3□□□□□ -2.2
CSDE1-202ENST00000339438 KRTAP5-11Q6L8G4 156 aa1.28□□□□□ -2.2
CSDE1-202ENST00000339438 KRTAP21-2Q3LI59 83 aa1.17□□□□□ -2.22
CSDE1-202ENST00000339438 KRTAP21-1Q3LI58 79 aa1.13□□□□□ -2.23
CSDE1-202ENST00000339438 PHGR1C9JFL3 82 aa1.04□□□□□ -2.24
CSDE1-202ENST00000339438 KRTAP4-4Q9BYR3 166 aa1.02□□□□□ -2.25
CSDE1-202ENST00000339438 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 13 ms