RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 KRTAP4-12Q9BQ66 201 aa5.62□□□□□ -1.51
LIMS1-202ENST00000338045 KRTAP9-9Q9BYP9 154 aa5.62□□□□□ -1.51
LIMS1-202ENST00000338045 KRTAP9-4Q9BYQ2 154 aa5.62□□□□□ -1.51
LIMS1-202ENST00000338045 MACF1Q9UPN3 7388 aaKnown RBP5.61□□□□□ -1.51
LIMS1-202ENST00000338045 MT1EP04732 61 aa5.61□□□□□ -1.51
LIMS1-202ENST00000338045 MT1LQ93083 61 aa5.51□□□□□ -1.53
LIMS1-202ENST00000338045 KRTAP19-4Q3LI73 84 aa5.48□□□□□ -1.53
LIMS1-202ENST00000338045 KRTAP5-3Q6L8H2 238 aa5.47□□□□□ -1.53
LIMS1-202ENST00000338045 KRTAP4-7Q9BYR0 210 aa5.47□□□□□ -1.53
LIMS1-202ENST00000338045 LCE3CQ5T5A8 94 aa5.45□□□□□ -1.54
LIMS1-202ENST00000338045 SPRR2FQ96RM1 72 aa5.45□□□□□ -1.54
LIMS1-202ENST00000338045 SYNE2Q8WXH0 6885 aaKnown RBP5.43□□□□□ -1.54
LIMS1-202ENST00000338045 KRTAP5-9P26371 169 aa5.43□□□□□ -1.54
LIMS1-202ENST00000338045 MUC12Q9UKN1 5478 aa5.43□□□□□ -1.54
LIMS1-202ENST00000338045 LCE1DQ5T752 114 aa5.39□□□□□ -1.55
LIMS1-202ENST00000338045 KRTAP19-3Q7Z4W3 81 aa5.39□□□□□ -1.55
LIMS1-202ENST00000338045 MT1GP13640 62 aa5.34□□□□□ -1.55
LIMS1-202ENST00000338045 KRTAP9-7A8MTY7 169 aa5.32□□□□□ -1.56
LIMS1-202ENST00000338045 LCE5AQ5TCM9 118 aa5.3□□□□□ -1.56
LIMS1-202ENST00000338045 KRTAP6-3Q3LI67 103 aa5.29□□□□□ -1.56
LIMS1-202ENST00000338045 MT1MQ8N339 61 aa5.28□□□□□ -1.56
LIMS1-202ENST00000338045 KRTAP4-9Q9BYQ8 210 aa5.26□□□□□ -1.57
LIMS1-202ENST00000338045 LCE1AQ5T7P2 110 aa5.24□□□□□ -1.57
LIMS1-202ENST00000338045 KRTAP4-2Q9BYR5 136 aa5.22□□□□□ -1.57
LIMS1-202ENST00000338045 MDN1Q9NU22 5596 aa5.21□□□□□ -1.58
LIMS1-202ENST00000338045 KRTAP9-6A8MVA2 160 aa5.17□□□□□ -1.58
LIMS1-202ENST00000338045 KRTAP4-3Q9BYR4 195 aa5.17□□□□□ -1.58
LIMS1-202ENST00000338045 SPRR2EP22531 72 aa5.15□□□□□ -1.58
LIMS1-202ENST00000338045 SPRR2BP35325 72 aa5.15□□□□□ -1.58
LIMS1-202ENST00000338045 SPRR2AP35326 72 aa5.15□□□□□ -1.58
LIMS1-202ENST00000338045 KRTAP4-11Q9BYQ6 195 aa5□□□□□ -1.61
LIMS1-202ENST00000338045 DSTQ03001 7570 aaKnown RBP4.97□□□□□ -1.61
LIMS1-202ENST00000338045 NEBP20929 6669 aa4.97□□□□□ -1.61
LIMS1-202ENST00000338045 SPRR2DP22532 72 aa4.96□□□□□ -1.61
LIMS1-202ENST00000338045 KRTAP2-3P0C7H8 128 aa4.79□□□□□ -1.64
LIMS1-202ENST00000338045 KRTAP2-4Q9BYR9 128 aa4.79□□□□□ -1.64
LIMS1-202ENST00000338045 KRTAP2-1Q9BYU5 128 aa4.79□□□□□ -1.64
LIMS1-202ENST00000338045 KRTAP5-5Q701N2 237 aaPredicted RBP4.79□□□□□ -1.64
LIMS1-202ENST00000338045 LCE4AQ5TA78 99 aa4.71□□□□□ -1.66
LIMS1-202ENST00000338045 MT1AP04731 61 aa4.68□□□□□ -1.66
LIMS1-202ENST00000338045 KRTAP20-1Q3LI63 56 aa4.66□□□□□ -1.66
LIMS1-202ENST00000338045 KRTAP2-2Q9BYT5 123 aa4.64□□□□□ -1.67
LIMS1-202ENST00000338045 KRTAP6-1Q3LI64 71 aa4.63□□□□□ -1.67
LIMS1-202ENST00000338045 KRTAP5-4Q6L8H1 288 aa4.55□□□□□ -1.68
LIMS1-202ENST00000338045 SYNE1Q8NF91 8797 aaKnown RBP4.5□□□□□ -1.69
LIMS1-202ENST00000338045 KRTAP12-4P60329 112 aa4.39□□□□□ -1.71
LIMS1-202ENST00000338045 MT4P47944 62 aa4.3□□□□□ -1.72
LIMS1-202ENST00000338045 KRTAP6-2Q3LI66 62 aa4.25□□□□□ -1.73
LIMS1-202ENST00000338045 MT3P25713 68 aa4.23□□□□□ -1.73
LIMS1-202ENST00000338045 KRTAP20-2Q3LI61 65 aa4.23□□□□□ -1.73
LIMS1-202ENST00000338045 HMCN1Q96RW7 5635 aa4.2□□□□□ -1.74
LIMS1-202ENST00000338045 KRTAP5-2Q701N4 177 aa4.14□□□□□ -1.75
LIMS1-202ENST00000338045 LCE3DQ9BYE3 92 aa4.09□□□□□ -1.76
LIMS1-202ENST00000338045 LCE3EQ5T5B0 92 aa3.98□□□□□ -1.77
LIMS1-202ENST00000338045 LCE1EQ5T753 118 aa3.97□□□□□ -1.77
LIMS1-202ENST00000338045 OBSCNQ5VST9 7968 aa3.91□□□□□ -1.78
LIMS1-202ENST00000338045 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.86□□□□□ -1.79
LIMS1-202ENST00000338045 AHNAK2Q8IVF2 5795 aa3.81□□□□□ -1.8
LIMS1-202ENST00000338045 GPR98Q8WXG9 6306 aa3.81□□□□□ -1.8
LIMS1-202ENST00000338045 PRM1P04553 51 aa3.79□□□□□ -1.8
LIMS1-202ENST00000338045 LCE1FQ5T754 118 aa3.78□□□□□ -1.8
LIMS1-202ENST00000338045 KRTAP5-10Q6L8G5 202 aa3.67□□□□□ -1.82
LIMS1-202ENST00000338045 KRTAP5-1Q6L8H4 278 aa3.57□□□□□ -1.84
LIMS1-202ENST00000338045 KRTAP5-8O75690 187 aa3.53□□□□□ -1.84
LIMS1-202ENST00000338045 KRTAP5-7Q6L8G8 165 aa3.45□□□□□ -1.86
LIMS1-202ENST00000338045 LCE1CQ5T751 118 aa3.43□□□□□ -1.86
LIMS1-202ENST00000338045 LCE1BQ5T7P3 118 aa3.43□□□□□ -1.86
LIMS1-202ENST00000338045 MUC5ACP98088 5654 aa3.43□□□□□ -1.86
LIMS1-202ENST00000338045 KRTAP5-11Q6L8G4 156 aa3.33□□□□□ -1.88
LIMS1-202ENST00000338045 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
LIMS1-202ENST00000338045 MUC5BQ9HC84 5762 aaPredicted RBP3.11□□□□□ -1.91
LIMS1-202ENST00000338045 KRTAP21-2Q3LI59 83 aa3.05□□□□□ -1.92
LIMS1-202ENST00000338045 AHNAKQ09666 5890 aaKnown RBP3.01□□□□□ -1.93
LIMS1-202ENST00000338045 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
LIMS1-202ENST00000338045 PHGR1C9JFL3 82 aa2.6□□□□□ -1.99
LIMS1-202ENST00000338045 MUC19Q7Z5P9 8384 aa2.3□□□□□ -2.04
LIMS1-202ENST00000338045 MUC16Q8WXI7 14507 aa1.68□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 90.6 ms