RNA–Protein interactions for RNA: ENST00000330588.4

SMG1-201, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5 BASIC

Gene SMG1, Length 1,588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-201ENST00000330588 KRTAP5-8O75690 187 aa2.9□□□□□ -1.95
SMG1-201ENST00000330588 SPINT4Q6UDR6 99 aa2.9□□□□□ -1.95
SMG1-201ENST00000330588 SPRR2GQ9BYE4 73 aa2.88□□□□□ -1.95
SMG1-201ENST00000330588 KRTAP19-8Q3LI54 63 aa2.87□□□□□ -1.95
SMG1-201ENST00000330588 CRIPTQ9P021 101 aa2.87□□□□□ -1.95
SMG1-201ENST00000330588 PRO2289Q9P1D8 64 aa2.87□□□□□ -1.95
SMG1-201ENST00000330588 H0YAA0 97 aa2.86□□□□□ -1.95
SMG1-201ENST00000330588 USH2AO75445 5202 aa2.84□□□□□ -1.95
SMG1-201ENST00000330588 MT1BP07438 61 aa2.83□□□□□ -1.96
SMG1-201ENST00000330588 KRTAP6-3Q3LI67 103 aa2.83□□□□□ -1.96
SMG1-201ENST00000330588 FCGBPQ9Y6R7 5405 aaPredicted RBP2.81□□□□□ -1.96
SMG1-201ENST00000330588 LCE3AQ5TA76 89 aa2.81□□□□□ -1.96
SMG1-201ENST00000330588 LCE3EQ5T5B0 92 aa2.78□□□□□ -1.96
SMG1-201ENST00000330588 SSPOA2VEC9 5147 aa2.78□□□□□ -1.96
SMG1-201ENST00000330588 ACYP2P14621 99 aa2.77□□□□□ -1.97
SMG1-201ENST00000330588 R4GN34 69 aa2.76□□□□□ -1.97
SMG1-201ENST00000330588 SYNE2Q8WXH0 6885 aaKnown RBP2.72□□□□□ -1.97
SMG1-201ENST00000330588 MACF1Q9UPN3 7388 aaKnown RBP2.71□□□□□ -1.98
SMG1-201ENST00000330588 INE1O15225 51 aa2.68□□□□□ -1.98
SMG1-201ENST00000330588 KRTAP12-2P59991 146 aa2.68□□□□□ -1.98
SMG1-201ENST00000330588 PLAC4Q8WY50 150 aa2.67□□□□□ -1.98
SMG1-201ENST00000330588 MT1XP80297 61 aa2.66□□□□□ -1.98
SMG1-201ENST00000330588 KRTAP5-5Q701N2 237 aaPredicted RBP2.65□□□□□ -1.99
SMG1-201ENST00000330588 M0QZ58 72 aa2.64□□□□□ -1.99
SMG1-201ENST00000330588 GPR98Q8WXG9 6306 aa2.59□□□□□ -1.99
SMG1-201ENST00000330588 KRTAP20-1Q3LI63 56 aa2.58□□□□□ -2
SMG1-201ENST00000330588 KRTAP8-1Q8IUC2 63 aa2.57□□□□□ -2
SMG1-201ENST00000330588 NEBP20929 6669 aa2.56□□□□□ -2
SMG1-201ENST00000330588 SPRR2FQ96RM1 72 aa2.56□□□□□ -2
SMG1-201ENST00000330588 KRTAP2-3P0C7H8 128 aa2.54□□□□□ -2
SMG1-201ENST00000330588 KRTAP2-4Q9BYR9 128 aa2.54□□□□□ -2
SMG1-201ENST00000330588 SPRR2EP22531 72 aa2.53□□□□□ -2.01
SMG1-201ENST00000330588 SPRR2BP35325 72 aa2.53□□□□□ -2.01
SMG1-201ENST00000330588 SPRR2AP35326 72 aa2.53□□□□□ -2.01
SMG1-201ENST00000330588 MUC12Q9UKN1 5478 aa2.5□□□□□ -2.01
SMG1-201ENST00000330588 LCE1CQ5T751 118 aa2.49□□□□□ -2.01
SMG1-201ENST00000330588 LCE1BQ5T7P3 118 aa2.49□□□□□ -2.01
SMG1-201ENST00000330588 KRTAP13-4Q3LI77 160 aa2.47□□□□□ -2.01
SMG1-201ENST00000330588 PP632Q6XCG6 107 aa2.47□□□□□ -2.01
SMG1-201ENST00000330588 KRTAP2-1Q9BYU5 128 aa2.46□□□□□ -2.02
SMG1-201ENST00000330588 C10orf95Q9H7T3 257 aa2.46□□□□□ -2.02
SMG1-201ENST00000330588 SPRR2DP22532 72 aa2.45□□□□□ -2.02
SMG1-201ENST00000330588 KMT2DO14686 5537 aa2.44□□□□□ -2.02
SMG1-201ENST00000330588 MDN1Q9NU22 5596 aa2.43□□□□□ -2.02
SMG1-201ENST00000330588 KRTAP12-1P59990 96 aa2.38□□□□□ -2.03
SMG1-201ENST00000330588 SPRR5A0A1B0GTR4 108 aa2.37□□□□□ -2.03
SMG1-201ENST00000330588 KRTAP19-7Q3SYF9 63 aa2.37□□□□□ -2.03
SMG1-201ENST00000330588 A0A0D9SG42 100 aa2.36□□□□□ -2.03
SMG1-201ENST00000330588 MT1EP04732 61 aa2.36□□□□□ -2.03
SMG1-201ENST00000330588 KRTAP19-3Q7Z4W3 81 aa2.35□□□□□ -2.03
SMG1-201ENST00000330588 MT1GP13640 62 aa2.32□□□□□ -2.04
SMG1-201ENST00000330588 KRTAP19-5Q3LI72 72 aa2.29□□□□□ -2.04
SMG1-201ENST00000330588 TNP1P09430 55 aa2.28□□□□□ -2.04
SMG1-201ENST00000330588 LCE3DQ9BYE3 92 aa2.26□□□□□ -2.05
SMG1-201ENST00000330588 MT1LQ93083 61 aa2.25□□□□□ -2.05
SMG1-201ENST00000330588 MT1MQ8N339 61 aa2.23□□□□□ -2.05
SMG1-201ENST00000330588 KRTAP12-3P60328 96 aa2.18□□□□□ -2.06
SMG1-201ENST00000330588 DSTQ03001 7570 aaKnown RBP2.14□□□□□ -2.07
SMG1-201ENST00000330588 MT4P47944 62 aa2.1□□□□□ -2.07
SMG1-201ENST00000330588 AHNAKQ09666 5890 aaKnown RBP2.08□□□□□ -2.08
SMG1-201ENST00000330588 KRTAP5-7Q6L8G8 165 aa2.06□□□□□ -2.08
SMG1-201ENST00000330588 KRTAP5-10Q6L8G5 202 aa2.04□□□□□ -2.08
SMG1-201ENST00000330588 KRTAP12-4P60329 112 aa2.02□□□□□ -2.09
SMG1-201ENST00000330588 KRTAP20-2Q3LI61 65 aa2.02□□□□□ -2.09
SMG1-201ENST00000330588 MUC19Q7Z5P9 8384 aa2.02□□□□□ -2.09
SMG1-201ENST00000330588 AHNAK2Q8IVF2 5795 aa2.01□□□□□ -2.09
SMG1-201ENST00000330588 MT1AP04731 61 aa1.93□□□□□ -2.1
SMG1-201ENST00000330588 KRTAP6-1Q3LI64 71 aa1.89□□□□□ -2.11
SMG1-201ENST00000330588 MUC5BQ9HC84 5762 aaPredicted RBP1.88□□□□□ -2.11
SMG1-201ENST00000330588 SYNE1Q8NF91 8797 aaKnown RBP1.81□□□□□ -2.12
SMG1-201ENST00000330588 KRTAP21-2Q3LI59 83 aa1.81□□□□□ -2.12
SMG1-201ENST00000330588 KRTAP6-2Q3LI66 62 aa1.79□□□□□ -2.12
SMG1-201ENST00000330588 MUC5ACP98088 5654 aa1.74□□□□□ -2.13
SMG1-201ENST00000330588 PRM1P04553 51 aa1.43□□□□□ -2.18
SMG1-201ENST00000330588 PHGR1C9JFL3 82 aa1.2□□□□□ -2.22
SMG1-201ENST00000330588 KRTAP21-1Q3LI58 79 aa1.08□□□□□ -2.24
SMG1-201ENST00000330588 MUC16Q8WXI7 14507 aa0.81□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 12.2 ms