RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.2□□□□□ -1.58
TPM3-206ENST00000330188 KRTAP19-6Q3LI70 58 aa5.2□□□□□ -1.58
TPM3-206ENST00000330188 LCE3BQ5TA77 95 aa5.13□□□□□ -1.59
TPM3-206ENST00000330188 MT1EP04732 61 aa5.12□□□□□ -1.59
TPM3-206ENST00000330188 MT1LQ93083 61 aa5.11□□□□□ -1.59
TPM3-206ENST00000330188 KRTAP9-6A8MVA2 160 aa5.09□□□□□ -1.59
TPM3-206ENST00000330188 FSIP2Q5CZC0 6907 aa5.09□□□□□ -1.6
TPM3-206ENST00000330188 KRTAP4-7Q9BYR0 210 aa5.08□□□□□ -1.6
TPM3-206ENST00000330188 LCE5AQ5TCM9 118 aa5.02□□□□□ -1.61
TPM3-206ENST00000330188 INE1O15225 51 aa4.95□□□□□ -1.62
TPM3-206ENST00000330188 CRCT1Q9UGL9 99 aa4.92□□□□□ -1.62
TPM3-206ENST00000330188 FCGBPQ9Y6R7 5405 aaPredicted RBP4.89□□□□□ -1.63
TPM3-206ENST00000330188 KRTAP2-3P0C7H8 128 aa4.87□□□□□ -1.63
TPM3-206ENST00000330188 KRTAP2-4Q9BYR9 128 aa4.87□□□□□ -1.63
TPM3-206ENST00000330188 KRTAP2-1Q9BYU5 128 aa4.87□□□□□ -1.63
TPM3-206ENST00000330188 KRTAP19-3Q7Z4W3 81 aa4.82□□□□□ -1.64
TPM3-206ENST00000330188 KRTAP4-3Q9BYR4 195 aa4.81□□□□□ -1.64
TPM3-206ENST00000330188 MT1MQ8N339 61 aa4.79□□□□□ -1.64
TPM3-206ENST00000330188 MUC12Q9UKN1 5478 aa4.79□□□□□ -1.64
TPM3-206ENST00000330188 MT1GP13640 62 aa4.79□□□□□ -1.64
TPM3-206ENST00000330188 LCE1DQ5T752 114 aa4.76□□□□□ -1.65
TPM3-206ENST00000330188 SPRR2FQ96RM1 72 aa4.69□□□□□ -1.66
TPM3-206ENST00000330188 MACF1Q9UPN3 7388 aaKnown RBP4.57□□□□□ -1.68
TPM3-206ENST00000330188 LCE1AQ5T7P2 110 aa4.54□□□□□ -1.68
TPM3-206ENST00000330188 KRTAP4-9Q9BYQ8 210 aa4.52□□□□□ -1.69
TPM3-206ENST00000330188 KRTAP4-11Q9BYQ6 195 aa4.49□□□□□ -1.69
TPM3-206ENST00000330188 SYNE2Q8WXH0 6885 aaKnown RBP4.47□□□□□ -1.69
TPM3-206ENST00000330188 DSTQ03001 7570 aaKnown RBP4.45□□□□□ -1.7
TPM3-206ENST00000330188 KRTAP5-9P26371 169 aa4.45□□□□□ -1.7
TPM3-206ENST00000330188 MDN1Q9NU22 5596 aa4.4□□□□□ -1.71
TPM3-206ENST00000330188 KRTAP6-3Q3LI67 103 aa4.37□□□□□ -1.71
TPM3-206ENST00000330188 SPRR2EP22531 72 aa4.31□□□□□ -1.72
TPM3-206ENST00000330188 SPRR2BP35325 72 aa4.31□□□□□ -1.72
TPM3-206ENST00000330188 SPRR2AP35326 72 aa4.31□□□□□ -1.72
TPM3-206ENST00000330188 KRTAP6-1Q3LI64 71 aa4.31□□□□□ -1.72
TPM3-206ENST00000330188 KRTAP4-2Q9BYR5 136 aa4.3□□□□□ -1.72
TPM3-206ENST00000330188 MT1AP04731 61 aa4.3□□□□□ -1.72
TPM3-206ENST00000330188 KRTAP5-5Q701N2 237 aaPredicted RBP4.27□□□□□ -1.73
TPM3-206ENST00000330188 MT3P25713 68 aa4.27□□□□□ -1.73
TPM3-206ENST00000330188 KRTAP12-4P60329 112 aa4.24□□□□□ -1.73
TPM3-206ENST00000330188 LCE1FQ5T754 118 aa4.18□□□□□ -1.74
TPM3-206ENST00000330188 KRTAP2-2Q9BYT5 123 aa4.16□□□□□ -1.74
TPM3-206ENST00000330188 SPRR2DP22532 72 aa4.13□□□□□ -1.75
TPM3-206ENST00000330188 SYNE1Q8NF91 8797 aaKnown RBP4.1□□□□□ -1.75
TPM3-206ENST00000330188 NEBP20929 6669 aa4.08□□□□□ -1.76
TPM3-206ENST00000330188 LCE3DQ9BYE3 92 aa4.04□□□□□ -1.76
TPM3-206ENST00000330188 LCE3EQ5T5B0 92 aa3.98□□□□□ -1.77
TPM3-206ENST00000330188 KRTAP6-2Q3LI66 62 aa3.89□□□□□ -1.79
TPM3-206ENST00000330188 KRTAP20-1Q3LI63 56 aa3.85□□□□□ -1.79
TPM3-206ENST00000330188 KRTAP5-4Q6L8H1 288 aa3.83□□□□□ -1.8
TPM3-206ENST00000330188 KRTAP5-3Q6L8H2 238 aa3.82□□□□□ -1.8
TPM3-206ENST00000330188 PRM1P04553 51 aa3.74□□□□□ -1.81
TPM3-206ENST00000330188 MT4P47944 62 aa3.62□□□□□ -1.83
TPM3-206ENST00000330188 KRTAP20-2Q3LI61 65 aa3.59□□□□□ -1.84
TPM3-206ENST00000330188 OBSCNQ5VST9 7968 aa3.57□□□□□ -1.84
TPM3-206ENST00000330188 KRTAP5-2Q701N4 177 aa3.57□□□□□ -1.84
TPM3-206ENST00000330188 HMCN1Q96RW7 5635 aa3.45□□□□□ -1.86
TPM3-206ENST00000330188 LCE1EQ5T753 118 aa3.28□□□□□ -1.89
TPM3-206ENST00000330188 MUC5ACP98088 5654 aa3.22□□□□□ -1.89
TPM3-206ENST00000330188 AHNAK2Q8IVF2 5795 aa3.14□□□□□ -1.91
TPM3-206ENST00000330188 LCE1BQ5T7P3 118 aa3.1□□□□□ -1.91
TPM3-206ENST00000330188 KRTAP5-11Q6L8G4 156 aa3.08□□□□□ -1.92
TPM3-206ENST00000330188 KRTAP5-10Q6L8G5 202 aa3.05□□□□□ -1.92
TPM3-206ENST00000330188 KRTAP5-1Q6L8H4 278 aa3.04□□□□□ -1.92
TPM3-206ENST00000330188 LCE1CQ5T751 118 aa3.02□□□□□ -1.93
TPM3-206ENST00000330188 GPR98Q8WXG9 6306 aa2.95□□□□□ -1.94
TPM3-206ENST00000330188 KRTAP5-8O75690 187 aa2.88□□□□□ -1.95
TPM3-206ENST00000330188 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.86□□□□□ -1.95
TPM3-206ENST00000330188 KRTAP5-7Q6L8G8 165 aa2.84□□□□□ -1.96
TPM3-206ENST00000330188 KRTAP21-2Q3LI59 83 aa2.8□□□□□ -1.96
TPM3-206ENST00000330188 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2
TPM3-206ENST00000330188 KRTAP4-4Q9BYR3 166 aa2.52□□□□□ -2.01
TPM3-206ENST00000330188 AHNAKQ09666 5890 aaKnown RBP2.42□□□□□ -2.02
TPM3-206ENST00000330188 KRTAP21-1Q3LI58 79 aa2.35□□□□□ -2.03
TPM3-206ENST00000330188 PHGR1C9JFL3 82 aa2.25□□□□□ -2.05
TPM3-206ENST00000330188 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
TPM3-206ENST00000330188 MUC16Q8WXI7 14507 aa1.51□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 139.3 ms