RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 SSPOA2VEC9 5147 aa4.78□□□□□ -1.64
SSBP3-201ENST00000326956 KRTAP9-6A0A140TA67 174 aa4.76□□□□□ -1.65
SSBP3-201ENST00000326956 LOC100996750A0A140TA64 210 aa4.73□□□□□ -1.65
SSBP3-201ENST00000326956 KRTAP9-2Q9BYQ4 174 aa4.73□□□□□ -1.65
SSBP3-201ENST00000326956 MT1GP13640 62 aa4.71□□□□□ -1.66
SSBP3-201ENST00000326956 KRTAP19-6Q3LI70 58 aa4.71□□□□□ -1.66
SSBP3-201ENST00000326956 KRTAP4-3Q9BYR4 195 aa4.7□□□□□ -1.66
SSBP3-201ENST00000326956 CRCT1Q9UGL9 99 aa4.69□□□□□ -1.66
SSBP3-201ENST00000326956 MT1MQ8N339 61 aa4.62□□□□□ -1.67
SSBP3-201ENST00000326956 KRTAP12-4P60329 112 aa4.61□□□□□ -1.67
SSBP3-201ENST00000326956 KRTAP19-3Q7Z4W3 81 aa4.6□□□□□ -1.67
SSBP3-201ENST00000326956 KRTAP2-2Q9BYT5 123 aa4.5□□□□□ -1.69
SSBP3-201ENST00000326956 FCGBPQ9Y6R7 5405 aaPredicted RBP4.49□□□□□ -1.69
SSBP3-201ENST00000326956 MUC12Q9UKN1 5478 aa4.48□□□□□ -1.69
SSBP3-201ENST00000326956 OBSCNQ5VST9 7968 aa4.45□□□□□ -1.7
SSBP3-201ENST00000326956 LCE3BQ5TA77 95 aa4.43□□□□□ -1.7
SSBP3-201ENST00000326956 DSTQ03001 7570 aaKnown RBP4.43□□□□□ -1.7
SSBP3-201ENST00000326956 SPRR2FQ96RM1 72 aa4.4□□□□□ -1.71
SSBP3-201ENST00000326956 LCE5AQ5TCM9 118 aa4.38□□□□□ -1.71
SSBP3-201ENST00000326956 KRTAP4-9Q9BYQ8 210 aa4.32□□□□□ -1.72
SSBP3-201ENST00000326956 SYNE1Q8NF91 8797 aaKnown RBP4.3□□□□□ -1.72
SSBP3-201ENST00000326956 MT1AP04731 61 aa4.27□□□□□ -1.73
SSBP3-201ENST00000326956 KRTAP4-6Q9BYQ5 205 aa4.25□□□□□ -1.73
SSBP3-201ENST00000326956 MACF1Q9UPN3 7388 aaKnown RBP4.24□□□□□ -1.73
SSBP3-201ENST00000326956 LCE3DQ9BYE3 92 aa4.24□□□□□ -1.73
SSBP3-201ENST00000326956 KRTAP6-1Q3LI64 71 aa4.23□□□□□ -1.73
SSBP3-201ENST00000326956 LCE3EQ5T5B0 92 aa4.2□□□□□ -1.74
SSBP3-201ENST00000326956 KRTAP9-7A8MTY7 169 aa4.19□□□□□ -1.74
SSBP3-201ENST00000326956 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.18□□□□□ -1.74
SSBP3-201ENST00000326956 KRTAP6-3Q3LI67 103 aa4.15□□□□□ -1.75
SSBP3-201ENST00000326956 LCE1AQ5T7P2 110 aa4.15□□□□□ -1.75
SSBP3-201ENST00000326956 PRM1P04553 51 aa4.09□□□□□ -1.75
SSBP3-201ENST00000326956 SYNE2Q8WXH0 6885 aaKnown RBP4.08□□□□□ -1.76
SSBP3-201ENST00000326956 KRTAP5-5Q701N2 237 aaPredicted RBP4.04□□□□□ -1.76
SSBP3-201ENST00000326956 MDN1Q9NU22 5596 aa4.03□□□□□ -1.76
SSBP3-201ENST00000326956 KRTAP5-9P26371 169 aa4.01□□□□□ -1.77
SSBP3-201ENST00000326956 LCE1EQ5T753 118 aa3.99□□□□□ -1.77
SSBP3-201ENST00000326956 SPRR2EP22531 72 aa3.94□□□□□ -1.78
SSBP3-201ENST00000326956 SPRR2BP35325 72 aa3.94□□□□□ -1.78
SSBP3-201ENST00000326956 SPRR2AP35326 72 aa3.94□□□□□ -1.78
SSBP3-201ENST00000326956 KRTAP9-4Q9BYQ2 154 aa3.91□□□□□ -1.78
SSBP3-201ENST00000326956 KRTAP6-2Q3LI66 62 aa3.9□□□□□ -1.79
SSBP3-201ENST00000326956 LCE1FQ5T754 118 aa3.85□□□□□ -1.79
SSBP3-201ENST00000326956 LCE1DQ5T752 114 aa3.84□□□□□ -1.79
SSBP3-201ENST00000326956 MT3P25713 68 aa3.79□□□□□ -1.8
SSBP3-201ENST00000326956 SPRR2DP22532 72 aa3.77□□□□□ -1.81
SSBP3-201ENST00000326956 KRTAP20-1Q3LI63 56 aa3.73□□□□□ -1.81
SSBP3-201ENST00000326956 NEBP20929 6669 aa3.69□□□□□ -1.82
SSBP3-201ENST00000326956 KRTAP5-4Q6L8H1 288 aa3.46□□□□□ -1.86
SSBP3-201ENST00000326956 KRTAP5-3Q6L8H2 238 aa3.39□□□□□ -1.87
SSBP3-201ENST00000326956 KRTAP9-9Q9BYP9 154 aa3.35□□□□□ -1.87
SSBP3-201ENST00000326956 MT4P47944 62 aa3.33□□□□□ -1.88
SSBP3-201ENST00000326956 KRTAP20-2Q3LI61 65 aa3.26□□□□□ -1.89
SSBP3-201ENST00000326956 LCE4AQ5TA78 99 aa3.26□□□□□ -1.89
SSBP3-201ENST00000326956 KRTAP4-2Q9BYR5 136 aa3.25□□□□□ -1.89
SSBP3-201ENST00000326956 KRTAP5-2Q701N4 177 aa3.22□□□□□ -1.89
SSBP3-201ENST00000326956 KRTAP4-12Q9BQ66 201 aa3.2□□□□□ -1.9
SSBP3-201ENST00000326956 GPR98Q8WXG9 6306 aa3.15□□□□□ -1.9
SSBP3-201ENST00000326956 HMCN1Q96RW7 5635 aa3.15□□□□□ -1.91
SSBP3-201ENST00000326956 MUC5ACP98088 5654 aa3.13□□□□□ -1.91
SSBP3-201ENST00000326956 LCE1BQ5T7P3 118 aa3.08□□□□□ -1.92
SSBP3-201ENST00000326956 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
SSBP3-201ENST00000326956 KRTAP5-7Q6L8G8 165 aa3.06□□□□□ -1.92
SSBP3-201ENST00000326956 MUC19Q7Z5P9 8384 aa3.04□□□□□ -1.92
SSBP3-201ENST00000326956 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
SSBP3-201ENST00000326956 KRTAP5-1Q6L8H4 278 aa2.9□□□□□ -1.95
SSBP3-201ENST00000326956 AHNAK2Q8IVF2 5795 aa2.88□□□□□ -1.95
SSBP3-201ENST00000326956 LCE1CQ5T751 118 aa2.82□□□□□ -1.96
SSBP3-201ENST00000326956 AHNAKQ09666 5890 aaKnown RBP2.78□□□□□ -1.96
SSBP3-201ENST00000326956 MUC5BQ9HC84 5762 aaPredicted RBP2.77□□□□□ -1.97
SSBP3-201ENST00000326956 KRTAP21-2Q3LI59 83 aa2.69□□□□□ -1.98
SSBP3-201ENST00000326956 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.64□□□□□ -1.99
SSBP3-201ENST00000326956 KRTAP5-8O75690 187 aa2.59□□□□□ -1.99
SSBP3-201ENST00000326956 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
SSBP3-201ENST00000326956 KRTAP21-1Q3LI58 79 aa2.53□□□□□ -2
SSBP3-201ENST00000326956 KRTAP5-11Q6L8G4 156 aa2.4□□□□□ -2.03
SSBP3-201ENST00000326956 PHGR1C9JFL3 82 aa2.07□□□□□ -2.08
SSBP3-201ENST00000326956 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 214.2 ms