RNA–Protein interactions for RNA: ENST00000324685.10

RNF40-201, Transcript of ring finger protein 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF40, Length 5,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-201ENST00000324685 LPAP08519 4548 aa6.11□□□□□ -1.43
RNF40-201ENST00000324685 FLGP20930 4061 aaPredicted RBP6.07□□□□□ -1.44
RNF40-201ENST00000324685 KMT2CQ8NEZ4 4911 aaKnown RBP6.04□□□□□ -1.44
RNF40-201ENST00000324685 PKHD1P08F94 4074 aa6.03□□□□□ -1.44
RNF40-201ENST00000324685 KRTAP19-7Q3SYF9 63 aa6.02□□□□□ -1.45
RNF40-201ENST00000324685 KRTAP2-3P0C7H8 128 aa6□□□□□ -1.45
RNF40-201ENST00000324685 KRTAP2-4Q9BYR9 128 aa6□□□□□ -1.45
RNF40-201ENST00000324685 KRTAP2-1Q9BYU5 128 aa6□□□□□ -1.45
RNF40-201ENST00000324685 TNXBP22105 4242 aa6□□□□□ -1.45
RNF40-201ENST00000324685 KRTAP9-2Q9BYQ4 174 aa5.99□□□□□ -1.45
RNF40-201ENST00000324685 KRTAP4-9Q9BYQ8 210 aa5.88□□□□□ -1.47
RNF40-201ENST00000324685 LCE5AQ5TCM9 118 aa5.84□□□□□ -1.47
RNF40-201ENST00000324685 EPPK1P58107 5090 aaKnown RBP5.83□□□□□ -1.48
RNF40-201ENST00000324685 LCE2AQ5TA79 106 aaPredicted RBP5.76□□□□□ -1.49
RNF40-201ENST00000324685 LCE1AQ5T7P2 110 aa5.68□□□□□ -1.5
RNF40-201ENST00000324685 KRTAP20-1Q3LI63 56 aa5.67□□□□□ -1.5
RNF40-201ENST00000324685 KRTAP9-6A0A140TA67 174 aa5.66□□□□□ -1.5
RNF40-201ENST00000324685 KRTAP6-2Q3LI66 62 aa5.66□□□□□ -1.5
RNF40-201ENST00000324685 ABCA13Q86UQ4 5058 aa5.65□□□□□ -1.51
RNF40-201ENST00000324685 KRTAP9-4Q9BYQ2 154 aa5.64□□□□□ -1.51
RNF40-201ENST00000324685 KRTAP6-1Q3LI64 71 aa5.64□□□□□ -1.51
RNF40-201ENST00000324685 KRTAP6-3Q3LI67 103 aa5.52□□□□□ -1.53
RNF40-201ENST00000324685 LCE4AQ5TA78 99 aa5.52□□□□□ -1.53
RNF40-201ENST00000324685 RNF213Q63HN8 5207 aa5.5□□□□□ -1.53
RNF40-201ENST00000324685 KRTAP9-6A8MVA2 160 aa5.5□□□□□ -1.53
RNF40-201ENST00000324685 SYNE1Q8NF91 8797 aaKnown RBP5.47□□□□□ -1.53
RNF40-201ENST00000324685 HMCN2Q8NDA2 5059 aa5.46□□□□□ -1.53
RNF40-201ENST00000324685 FAT4Q6V0I7 4981 aa5.43□□□□□ -1.54
RNF40-201ENST00000324685 KRTAP9-7A8MTY7 169 aa5.39□□□□□ -1.55
RNF40-201ENST00000324685 LCE1CQ5T751 118 aa5.35□□□□□ -1.55
RNF40-201ENST00000324685 LCE1EQ5T753 118 aa5.35□□□□□ -1.55
RNF40-201ENST00000324685 LCE1FQ5T754 118 aa5.35□□□□□ -1.55
RNF40-201ENST00000324685 FSIP2Q5CZC0 6907 aa5.35□□□□□ -1.55
RNF40-201ENST00000324685 UBR4Q5T4S7 5183 aa5.3□□□□□ -1.56
RNF40-201ENST00000324685 SYNE2Q8WXH0 6885 aaKnown RBP5.28□□□□□ -1.56
RNF40-201ENST00000324685 KRTAP2-2Q9BYT5 123 aa5.26□□□□□ -1.57
RNF40-201ENST00000324685 OBSCNQ5VST9 7968 aa5.18□□□□□ -1.58
RNF40-201ENST00000324685 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.18□□□□□ -1.58
RNF40-201ENST00000324685 MUC2Q02817 5179 aa5.15□□□□□ -1.59
RNF40-201ENST00000324685 KRTAP9-9Q9BYP9 154 aa4.85□□□□□ -1.63
RNF40-201ENST00000324685 KRTAP4-11Q9BYQ6 195 aa4.71□□□□□ -1.66
RNF40-201ENST00000324685 USH2AO75445 5202 aa4.57□□□□□ -1.68
RNF40-201ENST00000324685 KRTAP5-9P26371 169 aa4.56□□□□□ -1.68
RNF40-201ENST00000324685 KRTAP20-2Q3LI61 65 aa4.5□□□□□ -1.69
RNF40-201ENST00000324685 FCGBPQ9Y6R7 5405 aaPredicted RBP4.49□□□□□ -1.69
RNF40-201ENST00000324685 KRTAP4-6Q9BYQ5 205 aa4.47□□□□□ -1.69
RNF40-201ENST00000324685 KMT2DO14686 5537 aa4.38□□□□□ -1.71
RNF40-201ENST00000324685 NEBP20929 6669 aa4.37□□□□□ -1.71
RNF40-201ENST00000324685 DSTQ03001 7570 aaKnown RBP4.33□□□□□ -1.72
RNF40-201ENST00000324685 MACF1Q9UPN3 7388 aaKnown RBP4.26□□□□□ -1.73
RNF40-201ENST00000324685 KRTAP4-4Q9BYR3 166 aa4.25□□□□□ -1.73
RNF40-201ENST00000324685 SSPOA2VEC9 5147 aa4.22□□□□□ -1.73
RNF40-201ENST00000324685 KRTAP5-4Q6L8H1 288 aa4.2□□□□□ -1.74
RNF40-201ENST00000324685 KRTAP5-5Q701N2 237 aaPredicted RBP4.15□□□□□ -1.75
RNF40-201ENST00000324685 KRTAP4-12Q9BQ66 201 aa4.14□□□□□ -1.75
RNF40-201ENST00000324685 KRTAP4-2Q9BYR5 136 aa4.14□□□□□ -1.75
RNF40-201ENST00000324685 MUC12Q9UKN1 5478 aa4.09□□□□□ -1.75
RNF40-201ENST00000324685 MUC19Q7Z5P9 8384 aa4.03□□□□□ -1.76
RNF40-201ENST00000324685 MDN1Q9NU22 5596 aa3.83□□□□□ -1.8
RNF40-201ENST00000324685 GPR98Q8WXG9 6306 aa3.66□□□□□ -1.82
RNF40-201ENST00000324685 KRTAP5-3Q6L8H2 238 aa3.64□□□□□ -1.83
RNF40-201ENST00000324685 KRTAP5-10Q6L8G5 202 aa3.32□□□□□ -1.88
RNF40-201ENST00000324685 MUC5ACP98088 5654 aa3.32□□□□□ -1.88
RNF40-201ENST00000324685 KRTAP5-8O75690 187 aa3.23□□□□□ -1.89
RNF40-201ENST00000324685 AHNAK2Q8IVF2 5795 aa3.19□□□□□ -1.9
RNF40-201ENST00000324685 KRTAP5-2Q701N4 177 aa3.11□□□□□ -1.91
RNF40-201ENST00000324685 PHGR1C9JFL3 82 aa3.1□□□□□ -1.91
RNF40-201ENST00000324685 HMCN1Q96RW7 5635 aa3.09□□□□□ -1.91
RNF40-201ENST00000324685 MUC5BQ9HC84 5762 aaPredicted RBP2.98□□□□□ -1.93
RNF40-201ENST00000324685 KRTAP5-11Q6L8G4 156 aa2.95□□□□□ -1.94
RNF40-201ENST00000324685 KRTAP5-1Q6L8H4 278 aa2.92□□□□□ -1.94
RNF40-201ENST00000324685 KRTAP21-2Q3LI59 83 aa2.74□□□□□ -1.97
RNF40-201ENST00000324685 KRTAP21-1Q3LI58 79 aa2.69□□□□□ -1.98
RNF40-201ENST00000324685 AHNAKQ09666 5890 aaKnown RBP2.64□□□□□ -1.99
RNF40-201ENST00000324685 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.53□□□□□ -2
RNF40-201ENST00000324685 KRTAP5-7Q6L8G8 165 aa2.17□□□□□ -2.06
RNF40-201ENST00000324685 MUC16Q8WXI7 14507 aa1.77□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 54 ms