RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 EPPK1P58107 5090 aaKnown RBP4.28□□□□□ -1.72
RFFL-201ENST00000315249 KRTAP9-7A8MTY7 169 aa4.27□□□□□ -1.73
RFFL-201ENST00000315249 KRTAP4-3Q9BYR4 195 aa4.27□□□□□ -1.73
RFFL-201ENST00000315249 LOC100996750A0A140TA64 210 aa4.26□□□□□ -1.73
RFFL-201ENST00000315249 SPRR5A0A1B0GTR4 108 aa4.26□□□□□ -1.73
RFFL-201ENST00000315249 LCE3EQ5T5B0 92 aa4.23□□□□□ -1.73
RFFL-201ENST00000315249 KRTAP20-1Q3LI63 56 aa4.23□□□□□ -1.73
RFFL-201ENST00000315249 ABCA13Q86UQ4 5058 aa4.19□□□□□ -1.74
RFFL-201ENST00000315249 MT3P25713 68 aa4.17□□□□□ -1.74
RFFL-201ENST00000315249 LCE1BQ5T7P3 118 aa4.15□□□□□ -1.75
RFFL-201ENST00000315249 LCE1DQ5T752 114 aa4.14□□□□□ -1.75
RFFL-201ENST00000315249 HMCN2Q8NDA2 5059 aa4.14□□□□□ -1.75
RFFL-201ENST00000315249 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
RFFL-201ENST00000315249 FAT4Q6V0I7 4981 aa4.1□□□□□ -1.75
RFFL-201ENST00000315249 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.07□□□□□ -1.76
RFFL-201ENST00000315249 KRTAP6-3Q3LI67 103 aa4.03□□□□□ -1.76
RFFL-201ENST00000315249 KRTAP19-7Q3SYF9 63 aa4.03□□□□□ -1.76
RFFL-201ENST00000315249 KRTAP2-3P0C7H8 128 aa4□□□□□ -1.77
RFFL-201ENST00000315249 KRTAP2-4Q9BYR9 128 aa4□□□□□ -1.77
RFFL-201ENST00000315249 UBR4Q5T4S7 5183 aa3.99□□□□□ -1.77
RFFL-201ENST00000315249 KRTAP4-9Q9BYQ8 210 aa3.97□□□□□ -1.77
RFFL-201ENST00000315249 MUC2Q02817 5179 aa3.94□□□□□ -1.78
RFFL-201ENST00000315249 LCE5AQ5TCM9 118 aa3.93□□□□□ -1.78
RFFL-201ENST00000315249 RNF213Q63HN8 5207 aa3.92□□□□□ -1.78
RFFL-201ENST00000315249 MT1AP04731 61 aa3.9□□□□□ -1.79
RFFL-201ENST00000315249 LCE1AQ5T7P2 110 aa3.9□□□□□ -1.79
RFFL-201ENST00000315249 SYNE1Q8NF91 8797 aaKnown RBP3.89□□□□□ -1.79
RFFL-201ENST00000315249 PRM1P04553 51 aa3.87□□□□□ -1.79
RFFL-201ENST00000315249 KRTAP2-2Q9BYT5 123 aa3.86□□□□□ -1.79
RFFL-201ENST00000315249 KRTAP2-1Q9BYU5 128 aa3.86□□□□□ -1.79
RFFL-201ENST00000315249 LCE4AQ5TA78 99 aa3.79□□□□□ -1.8
RFFL-201ENST00000315249 KRTAP6-2Q3LI66 62 aa3.77□□□□□ -1.81
RFFL-201ENST00000315249 KRTAP6-1Q3LI64 71 aa3.74□□□□□ -1.81
RFFL-201ENST00000315249 USH2AO75445 5202 aa3.71□□□□□ -1.82
RFFL-201ENST00000315249 KRTAP9-4Q9BYQ2 154 aa3.66□□□□□ -1.82
RFFL-201ENST00000315249 LCE1CQ5T751 118 aa3.6□□□□□ -1.83
RFFL-201ENST00000315249 LCE1EQ5T753 118 aa3.6□□□□□ -1.83
RFFL-201ENST00000315249 LCE1FQ5T754 118 aa3.6□□□□□ -1.83
RFFL-201ENST00000315249 OBSCNQ5VST9 7968 aa3.58□□□□□ -1.84
RFFL-201ENST00000315249 KRTAP9-6A8MVA2 160 aa3.57□□□□□ -1.84
RFFL-201ENST00000315249 KMT2DO14686 5537 aa3.48□□□□□ -1.85
RFFL-201ENST00000315249 DSTQ03001 7570 aaKnown RBP3.47□□□□□ -1.85
RFFL-201ENST00000315249 MACF1Q9UPN3 7388 aaKnown RBP3.44□□□□□ -1.86
RFFL-201ENST00000315249 KRTAP9-9Q9BYP9 154 aa3.42□□□□□ -1.86
RFFL-201ENST00000315249 FCGBPQ9Y6R7 5405 aaPredicted RBP3.41□□□□□ -1.86
RFFL-201ENST00000315249 GPR98Q8WXG9 6306 aa3.39□□□□□ -1.87
RFFL-201ENST00000315249 KRTAP5-9P26371 169 aa3.36□□□□□ -1.87
RFFL-201ENST00000315249 KRTAP4-6Q9BYQ5 205 aa3.33□□□□□ -1.88
RFFL-201ENST00000315249 MDN1Q9NU22 5596 aa3.3□□□□□ -1.88
RFFL-201ENST00000315249 NEBP20929 6669 aa3.22□□□□□ -1.89
RFFL-201ENST00000315249 KRTAP20-2Q3LI61 65 aa3.18□□□□□ -1.9
RFFL-201ENST00000315249 SSPOA2VEC9 5147 aa3.13□□□□□ -1.91
RFFL-201ENST00000315249 MUC12Q9UKN1 5478 aa3.09□□□□□ -1.91
RFFL-201ENST00000315249 KRTAP4-12Q9BQ66 201 aa2.98□□□□□ -1.93
RFFL-201ENST00000315249 KRTAP4-2Q9BYR5 136 aa2.98□□□□□ -1.93
RFFL-201ENST00000315249 AHNAK2Q8IVF2 5795 aa2.97□□□□□ -1.93
RFFL-201ENST00000315249 KRTAP5-4Q6L8H1 288 aa2.96□□□□□ -1.94
RFFL-201ENST00000315249 KRTAP4-11Q9BYQ6 195 aa2.93□□□□□ -1.94
RFFL-201ENST00000315249 KRTAP4-4Q9BYR3 166 aa2.92□□□□□ -1.94
RFFL-201ENST00000315249 HMCN1Q96RW7 5635 aa2.8□□□□□ -1.96
RFFL-201ENST00000315249 AHNAKQ09666 5890 aaKnown RBP2.76□□□□□ -1.97
RFFL-201ENST00000315249 KRTAP5-3Q6L8H2 238 aa2.71□□□□□ -1.98
RFFL-201ENST00000315249 KRTAP5-5Q701N2 237 aaPredicted RBP2.69□□□□□ -1.98
RFFL-201ENST00000315249 MUC19Q7Z5P9 8384 aa2.67□□□□□ -1.98
RFFL-201ENST00000315249 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
RFFL-201ENST00000315249 KRTAP5-8O75690 187 aa2.48□□□□□ -2.01
RFFL-201ENST00000315249 MUC5BQ9HC84 5762 aaPredicted RBP2.45□□□□□ -2.02
RFFL-201ENST00000315249 PHGR1C9JFL3 82 aa2.3□□□□□ -2.04
RFFL-201ENST00000315249 KRTAP5-2Q701N4 177 aa2.22□□□□□ -2.05
RFFL-201ENST00000315249 KRTAP5-10Q6L8G5 202 aa2.1□□□□□ -2.07
RFFL-201ENST00000315249 KRTAP5-1Q6L8H4 278 aa2.01□□□□□ -2.09
RFFL-201ENST00000315249 KRTAP5-11Q6L8G4 156 aa1.99□□□□□ -2.09
RFFL-201ENST00000315249 KRTAP21-2Q3LI59 83 aa1.86□□□□□ -2.11
RFFL-201ENST00000315249 KRTAP5-7Q6L8G8 165 aa1.84□□□□□ -2.12
RFFL-201ENST00000315249 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
RFFL-201ENST00000315249 KRTAP21-1Q3LI58 79 aa1.52□□□□□ -2.17
RFFL-201ENST00000315249 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 5.3 ms