RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 KRTAP2-3P0C7H8 128 aa4.48□□□□□ -1.69
SCFD1-201ENST00000311943 KRTAP2-4Q9BYR9 128 aa4.48□□□□□ -1.69
SCFD1-201ENST00000311943 DSTQ03001 7570 aaKnown RBP4.48□□□□□ -1.69
SCFD1-201ENST00000311943 KRTAP19-5Q3LI72 72 aa4.48□□□□□ -1.69
SCFD1-201ENST00000311943 MT1EP04732 61 aa4.47□□□□□ -1.69
SCFD1-201ENST00000311943 UQCR11O14957 56 aa4.46□□□□□ -1.7
SCFD1-201ENST00000311943 KRTAP15-1Q3LI76 137 aa4.45□□□□□ -1.7
SCFD1-201ENST00000311943 LCE3AQ5TA76 89 aa4.45□□□□□ -1.7
SCFD1-201ENST00000311943 MIR22HGQ0VDD5 57 aa4.41□□□□□ -1.7
SCFD1-201ENST00000311943 Q1T7F1 81 aa4.39□□□□□ -1.71
SCFD1-201ENST00000311943 KRTAP4-11Q9BYQ6 195 aa4.39□□□□□ -1.71
SCFD1-201ENST00000311943 LCE5AQ5TCM9 118 aa4.38□□□□□ -1.71
SCFD1-201ENST00000311943 KRTAP19-3Q7Z4W3 81 aa4.38□□□□□ -1.71
SCFD1-201ENST00000311943 TNP1P09430 55 aa4.37□□□□□ -1.71
SCFD1-201ENST00000311943 KRTAP2-2Q9BYT5 123 aa4.36□□□□□ -1.71
SCFD1-201ENST00000311943 KRTAP2-1Q9BYU5 128 aa4.36□□□□□ -1.71
SCFD1-201ENST00000311943 KRTAP4-3Q9BYR4 195 aa4.31□□□□□ -1.72
SCFD1-201ENST00000311943 MT1LQ93083 61 aa4.3□□□□□ -1.72
SCFD1-201ENST00000311943 V9GYY9 64 aa4.29□□□□□ -1.72
SCFD1-201ENST00000311943 A6NED7 52 aa4.26□□□□□ -1.73
SCFD1-201ENST00000311943 KRTAP5-3Q6L8H2 238 aa4.26□□□□□ -1.73
SCFD1-201ENST00000311943 MT1MQ8N339 61 aa4.25□□□□□ -1.73
SCFD1-201ENST00000311943 MT1GP13640 62 aa4.24□□□□□ -1.73
SCFD1-201ENST00000311943 RPS28P62857 69 aaKnown RBP4.23□□□□□ -1.73
SCFD1-201ENST00000311943 KRTAP12-3P60328 96 aa4.21□□□□□ -1.74
SCFD1-201ENST00000311943 K7ERS5 55 aa4.16□□□□□ -1.74
SCFD1-201ENST00000311943 PRAC1Q96KF2 57 aa4.15□□□□□ -1.75
SCFD1-201ENST00000311943 KRTAP25-1Q3LHN0 102 aa4.14□□□□□ -1.75
SCFD1-201ENST00000311943 PP632Q6XCG6 107 aa4.14□□□□□ -1.75
SCFD1-201ENST00000311943 CDC42SE1Q9NRR8 79 aa4.05□□□□□ -1.76
SCFD1-201ENST00000311943 MT4P47944 62 aa4.02□□□□□ -1.77
SCFD1-201ENST00000311943 ROMO1P60602 79 aa4.02□□□□□ -1.77
SCFD1-201ENST00000311943 HMCN1Q96RW7 5635 aa3.94□□□□□ -1.78
SCFD1-201ENST00000311943 KRTAP5-4Q6L8H1 288 aa3.94□□□□□ -1.78
SCFD1-201ENST00000311943 LCE3CQ5T5A8 94 aa3.89□□□□□ -1.79
SCFD1-201ENST00000311943 KRTAP5-5Q701N2 237 aaPredicted RBP3.88□□□□□ -1.79
SCFD1-201ENST00000311943 BRK1Q8WUW1 75 aa3.83□□□□□ -1.8
SCFD1-201ENST00000311943 SYNE1Q8NF91 8797 aaKnown RBP3.81□□□□□ -1.8
SCFD1-201ENST00000311943 KRTAP9-6A8MVA2 160 aa3.8□□□□□ -1.8
SCFD1-201ENST00000311943 GPR98Q8WXG9 6306 aa3.79□□□□□ -1.8
SCFD1-201ENST00000311943 KRTAP20-2Q3LI61 65 aa3.73□□□□□ -1.81
SCFD1-201ENST00000311943 AHNAK2Q8IVF2 5795 aa3.71□□□□□ -1.82
SCFD1-201ENST00000311943 KRTAP6-1Q3LI64 71 aa3.68□□□□□ -1.82
SCFD1-201ENST00000311943 KRTAP12-4P60329 112 aa3.65□□□□□ -1.82
SCFD1-201ENST00000311943 SPRR5A0A1B0GTR4 108 aa3.63□□□□□ -1.83
SCFD1-201ENST00000311943 KRTAP5-10Q6L8G5 202 aa3.62□□□□□ -1.83
SCFD1-201ENST00000311943 NDUFAF8A1L188 74 aa3.61□□□□□ -1.83
SCFD1-201ENST00000311943 MT1AP04731 61 aa3.61□□□□□ -1.83
SCFD1-201ENST00000311943 PMAIP1Q13794 54 aa3.57□□□□□ -1.84
SCFD1-201ENST00000311943 OBSCNQ5VST9 7968 aa3.56□□□□□ -1.84
SCFD1-201ENST00000311943 KRTAP6-2Q3LI66 62 aa3.48□□□□□ -1.85
SCFD1-201ENST00000311943 KRTAP5-2Q701N4 177 aa3.47□□□□□ -1.85
SCFD1-201ENST00000311943 KRTAP5-7Q6L8G8 165 aa3.4□□□□□ -1.87
SCFD1-201ENST00000311943 LCE1FQ5T754 118 aa3.38□□□□□ -1.87
SCFD1-201ENST00000311943 MT3P25713 68 aa3.35□□□□□ -1.87
SCFD1-201ENST00000311943 PRO0628Q9UI54 55 aa3.35□□□□□ -1.87
SCFD1-201ENST00000311943 KRTAP5-8O75690 187 aa3.27□□□□□ -1.89
SCFD1-201ENST00000311943 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.19□□□□□ -1.9
SCFD1-201ENST00000311943 KTN1-AS1Q86SY8 53 aa3.19□□□□□ -1.9
SCFD1-201ENST00000311943 KRTAP5-1Q6L8H4 278 aa3.13□□□□□ -1.91
SCFD1-201ENST00000311943 MUC5BQ9HC84 5762 aaPredicted RBP3.03□□□□□ -1.92
SCFD1-201ENST00000311943 MUC5ACP98088 5654 aa3.03□□□□□ -1.92
SCFD1-201ENST00000311943 AHNAKQ09666 5890 aaKnown RBP2.94□□□□□ -1.94
SCFD1-201ENST00000311943 LUZP6Q538Z0 58 aa2.93□□□□□ -1.94
SCFD1-201ENST00000311943 LCE1EQ5T753 118 aa2.93□□□□□ -1.94
SCFD1-201ENST00000311943 KRTAP5-11Q6L8G4 156 aa2.91□□□□□ -1.94
SCFD1-201ENST00000311943 LCE1BQ5T7P3 118 aa2.89□□□□□ -1.95
SCFD1-201ENST00000311943 LCE3EQ5T5B0 92 aa2.88□□□□□ -1.95
SCFD1-201ENST00000311943 LCE3DQ9BYE3 92 aa2.81□□□□□ -1.96
SCFD1-201ENST00000311943 LCE1CQ5T751 118 aa2.75□□□□□ -1.97
SCFD1-201ENST00000311943 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
SCFD1-201ENST00000311943 KRTAP21-2Q3LI59 83 aa2.41□□□□□ -2.02
SCFD1-201ENST00000311943 PHGR1C9JFL3 82 aa2.17□□□□□ -2.06
SCFD1-201ENST00000311943 PRM1P04553 51 aa2.13□□□□□ -2.07
SCFD1-201ENST00000311943 MUC19Q7Z5P9 8384 aa2.13□□□□□ -2.07
SCFD1-201ENST00000311943 INE1O15225 51 aa1.8□□□□□ -2.12
SCFD1-201ENST00000311943 KRTAP21-1Q3LI58 79 aa1.5□□□□□ -2.17
SCFD1-201ENST00000311943 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 774.9 ms