RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 KRTAP4-7Q9BYR0 210 aa5.21□□□□□ -1.58
USP42-201ENST00000306177 KRTAP19-6Q3LI70 58 aa5.14□□□□□ -1.59
USP42-201ENST00000306177 LCE3EQ5T5B0 92 aa5.13□□□□□ -1.59
USP42-201ENST00000306177 LCE2AQ5TA79 106 aaPredicted RBP5.09□□□□□ -1.59
USP42-201ENST00000306177 SYNE1Q8NF91 8797 aaKnown RBP5.06□□□□□ -1.6
USP42-201ENST00000306177 USH2AO75445 5202 aa5.05□□□□□ -1.6
USP42-201ENST00000306177 MT1MQ8N339 61 aa5.04□□□□□ -1.6
USP42-201ENST00000306177 KRTAP9-2Q9BYQ4 174 aa5.03□□□□□ -1.6
USP42-201ENST00000306177 LCE2DQ5TA82 110 aaPredicted RBP4.97□□□□□ -1.61
USP42-201ENST00000306177 KRTAP19-7Q3SYF9 63 aa4.9□□□□□ -1.62
USP42-201ENST00000306177 KRTAP4-3Q9BYR4 195 aa4.9□□□□□ -1.62
USP42-201ENST00000306177 MT3P25713 68 aa4.9□□□□□ -1.63
USP42-201ENST00000306177 KMT2DO14686 5537 aa4.89□□□□□ -1.63
USP42-201ENST00000306177 LOC100996750A0A140TA64 210 aa4.89□□□□□ -1.63
USP42-201ENST00000306177 OBSCNQ5VST9 7968 aa4.81□□□□□ -1.64
USP42-201ENST00000306177 MT4P47944 62 aa4.8□□□□□ -1.64
USP42-201ENST00000306177 KRTAP9-6A0A140TA67 174 aa4.77□□□□□ -1.65
USP42-201ENST00000306177 PRM1P04553 51 aa4.69□□□□□ -1.66
USP42-201ENST00000306177 MT1AP04731 61 aa4.69□□□□□ -1.66
USP42-201ENST00000306177 DSTQ03001 7570 aaKnown RBP4.68□□□□□ -1.66
USP42-201ENST00000306177 KRTAP2-3P0C7H8 128 aa4.59□□□□□ -1.67
USP42-201ENST00000306177 KRTAP2-4Q9BYR9 128 aa4.59□□□□□ -1.67
USP42-201ENST00000306177 KRTAP2-1Q9BYU5 128 aa4.59□□□□□ -1.67
USP42-201ENST00000306177 LCE1DQ5T752 114 aa4.59□□□□□ -1.68
USP42-201ENST00000306177 LCE1BQ5T7P3 118 aa4.58□□□□□ -1.68
USP42-201ENST00000306177 FCGBPQ9Y6R7 5405 aaPredicted RBP4.54□□□□□ -1.68
USP42-201ENST00000306177 SYNE2Q8WXH0 6885 aaKnown RBP4.52□□□□□ -1.69
USP42-201ENST00000306177 LCE1AQ5T7P2 110 aa4.52□□□□□ -1.69
USP42-201ENST00000306177 KRTAP9-7A8MTY7 169 aa4.51□□□□□ -1.69
USP42-201ENST00000306177 KRTAP4-9Q9BYQ8 210 aa4.5□□□□□ -1.69
USP42-201ENST00000306177 KRTAP6-3Q3LI67 103 aa4.49□□□□□ -1.69
USP42-201ENST00000306177 KRTAP9-6A8MVA2 160 aa4.48□□□□□ -1.69
USP42-201ENST00000306177 LCE5AQ5TCM9 118 aa4.46□□□□□ -1.7
USP42-201ENST00000306177 KRTAP20-1Q3LI63 56 aa4.46□□□□□ -1.7
USP42-201ENST00000306177 KRTAP6-1Q3LI64 71 aa4.4□□□□□ -1.71
USP42-201ENST00000306177 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.38□□□□□ -1.71
USP42-201ENST00000306177 MUC12Q9UKN1 5478 aa4.36□□□□□ -1.71
USP42-201ENST00000306177 KRTAP9-4Q9BYQ2 154 aa4.32□□□□□ -1.72
USP42-201ENST00000306177 KRTAP6-2Q3LI66 62 aa4.31□□□□□ -1.72
USP42-201ENST00000306177 SSPOA2VEC9 5147 aa4.26□□□□□ -1.73
USP42-201ENST00000306177 LCE4AQ5TA78 99 aa4.25□□□□□ -1.73
USP42-201ENST00000306177 KRTAP2-2Q9BYT5 123 aa4.22□□□□□ -1.73
USP42-201ENST00000306177 MACF1Q9UPN3 7388 aaKnown RBP4.09□□□□□ -1.75
USP42-201ENST00000306177 KRTAP5-9P26371 169 aa3.96□□□□□ -1.78
USP42-201ENST00000306177 MUC19Q7Z5P9 8384 aa3.9□□□□□ -1.78
USP42-201ENST00000306177 MDN1Q9NU22 5596 aa3.89□□□□□ -1.79
USP42-201ENST00000306177 LCE1CQ5T751 118 aa3.86□□□□□ -1.79
USP42-201ENST00000306177 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
USP42-201ENST00000306177 LCE1FQ5T754 118 aa3.86□□□□□ -1.79
USP42-201ENST00000306177 NEBP20929 6669 aa3.84□□□□□ -1.79
USP42-201ENST00000306177 KRTAP4-6Q9BYQ5 205 aa3.71□□□□□ -1.82
USP42-201ENST00000306177 KRTAP20-2Q3LI61 65 aa3.64□□□□□ -1.83
USP42-201ENST00000306177 KRTAP9-9Q9BYP9 154 aa3.64□□□□□ -1.83
USP42-201ENST00000306177 GPR98Q8WXG9 6306 aa3.52□□□□□ -1.85
USP42-201ENST00000306177 KRTAP4-11Q9BYQ6 195 aa3.45□□□□□ -1.86
USP42-201ENST00000306177 KRTAP5-4Q6L8H1 288 aa3.39□□□□□ -1.87
USP42-201ENST00000306177 KRTAP5-5Q701N2 237 aaPredicted RBP3.36□□□□□ -1.87
USP42-201ENST00000306177 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
USP42-201ENST00000306177 KRTAP4-12Q9BQ66 201 aa3.16□□□□□ -1.9
USP42-201ENST00000306177 KRTAP4-2Q9BYR5 136 aa3.16□□□□□ -1.9
USP42-201ENST00000306177 MUC5ACP98088 5654 aa3.1□□□□□ -1.91
USP42-201ENST00000306177 KRTAP5-3Q6L8H2 238 aa2.98□□□□□ -1.93
USP42-201ENST00000306177 HMCN1Q96RW7 5635 aa2.96□□□□□ -1.93
USP42-201ENST00000306177 AHNAK2Q8IVF2 5795 aa2.89□□□□□ -1.95
USP42-201ENST00000306177 KRTAP5-2Q701N4 177 aa2.77□□□□□ -1.97
USP42-201ENST00000306177 KRTAP5-8O75690 187 aa2.75□□□□□ -1.97
USP42-201ENST00000306177 KRTAP5-10Q6L8G5 202 aa2.66□□□□□ -1.98
USP42-201ENST00000306177 MUC5BQ9HC84 5762 aaPredicted RBP2.5□□□□□ -2.01
USP42-201ENST00000306177 AHNAKQ09666 5890 aaKnown RBP2.44□□□□□ -2.02
USP42-201ENST00000306177 KRTAP5-1Q6L8H4 278 aa2.43□□□□□ -2.02
USP42-201ENST00000306177 KRTAP5-11Q6L8G4 156 aa2.43□□□□□ -2.02
USP42-201ENST00000306177 PHGR1C9JFL3 82 aa2.36□□□□□ -2.03
USP42-201ENST00000306177 KRTAP21-2Q3LI59 83 aa2.32□□□□□ -2.04
USP42-201ENST00000306177 KRTAP5-7Q6L8G8 165 aa2.24□□□□□ -2.05
USP42-201ENST00000306177 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.19□□□□□ -2.06
USP42-201ENST00000306177 KRTAP21-1Q3LI58 79 aa2.12□□□□□ -2.07
USP42-201ENST00000306177 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 135.4 ms