RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 KRTAP12-3P60328 96 aa7.45□□□□□ -1.22
HOXC4-201ENST00000303406 SPRR5A0A1B0GTR4 108 aa7.44□□□□□ -1.22
HOXC4-201ENST00000303406 KRTAP19-6Q3LI70 58 aa7.37□□□□□ -1.23
HOXC4-201ENST00000303406 NDUFAF8A1L188 74 aa7.37□□□□□ -1.23
HOXC4-201ENST00000303406 LUZP6Q538Z0 58 aa7.32□□□□□ -1.24
HOXC4-201ENST00000303406 SSPOA2VEC9 5147 aa7.29□□□□□ -1.24
HOXC4-201ENST00000303406 KRTAP19-5Q3LI72 72 aa7.26□□□□□ -1.25
HOXC4-201ENST00000303406 KRTAP19-7Q3SYF9 63 aa7.1□□□□□ -1.27
HOXC4-201ENST00000303406 KMT2DO14686 5537 aa6.99□□□□□ -1.29
HOXC4-201ENST00000303406 LCE3CQ5T5A8 94 aa6.99□□□□□ -1.29
HOXC4-201ENST00000303406 MT1EP04732 61 aa6.96□□□□□ -1.29
HOXC4-201ENST00000303406 MT1LQ93083 61 aa6.87□□□□□ -1.31
HOXC4-201ENST00000303406 FCGBPQ9Y6R7 5405 aaPredicted RBP6.82□□□□□ -1.32
HOXC4-201ENST00000303406 FSIP2Q5CZC0 6907 aa6.78□□□□□ -1.32
HOXC4-201ENST00000303406 KRTAP19-3Q7Z4W3 81 aa6.62□□□□□ -1.35
HOXC4-201ENST00000303406 KRTAP9-6A8MVA2 160 aa6.6□□□□□ -1.35
HOXC4-201ENST00000303406 MT1GP13640 62 aa6.6□□□□□ -1.35
HOXC4-201ENST00000303406 CRCT1Q9UGL9 99 aa6.6□□□□□ -1.35
HOXC4-201ENST00000303406 MT1MQ8N339 61 aa6.52□□□□□ -1.37
HOXC4-201ENST00000303406 SPRR2FQ96RM1 72 aa6.51□□□□□ -1.37
HOXC4-201ENST00000303406 KRTAP5-9P26371 169 aa6.4□□□□□ -1.38
HOXC4-201ENST00000303406 MACF1Q9UPN3 7388 aaKnown RBP6.4□□□□□ -1.38
HOXC4-201ENST00000303406 MUC12Q9UKN1 5478 aa6.36□□□□□ -1.39
HOXC4-201ENST00000303406 KRTAP4-3Q9BYR4 195 aa6.35□□□□□ -1.39
HOXC4-201ENST00000303406 KRTAP2-3P0C7H8 128 aa6.32□□□□□ -1.4
HOXC4-201ENST00000303406 KRTAP2-4Q9BYR9 128 aa6.32□□□□□ -1.4
HOXC4-201ENST00000303406 KRTAP2-1Q9BYU5 128 aa6.32□□□□□ -1.4
HOXC4-201ENST00000303406 LCE1AQ5T7P2 110 aa6.22□□□□□ -1.41
HOXC4-201ENST00000303406 INE1O15225 51 aa6.18□□□□□ -1.42
HOXC4-201ENST00000303406 SYNE2Q8WXH0 6885 aaKnown RBP6.14□□□□□ -1.43
HOXC4-201ENST00000303406 KRTAP6-3Q3LI67 103 aa6.12□□□□□ -1.43
HOXC4-201ENST00000303406 SPRR2EP22531 72 aa6.1□□□□□ -1.43
HOXC4-201ENST00000303406 SPRR2BP35325 72 aa6.1□□□□□ -1.43
HOXC4-201ENST00000303406 SPRR2AP35326 72 aa6.1□□□□□ -1.43
HOXC4-201ENST00000303406 MDN1Q9NU22 5596 aa5.99□□□□□ -1.45
HOXC4-201ENST00000303406 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.98□□□□□ -1.45
HOXC4-201ENST00000303406 SPRR2DP22532 72 aa5.87□□□□□ -1.47
HOXC4-201ENST00000303406 KRTAP5-5Q701N2 237 aaPredicted RBP5.87□□□□□ -1.47
HOXC4-201ENST00000303406 MT1AP04731 61 aa5.85□□□□□ -1.47
HOXC4-201ENST00000303406 MT3P25713 68 aa5.82□□□□□ -1.48
HOXC4-201ENST00000303406 DSTQ03001 7570 aaKnown RBP5.8□□□□□ -1.48
HOXC4-201ENST00000303406 KRTAP6-1Q3LI64 71 aa5.76□□□□□ -1.49
HOXC4-201ENST00000303406 KRTAP5-11Q6L8G4 156 aa5.6□□□□□ -1.51
HOXC4-201ENST00000303406 NEBP20929 6669 aa5.6□□□□□ -1.51
HOXC4-201ENST00000303406 KRTAP2-2Q9BYT5 123 aa5.53□□□□□ -1.52
HOXC4-201ENST00000303406 LCE1FQ5T754 118 aa5.53□□□□□ -1.52
HOXC4-201ENST00000303406 SYNE1Q8NF91 8797 aaKnown RBP5.46□□□□□ -1.54
HOXC4-201ENST00000303406 KRTAP5-4Q6L8H1 288 aa5.45□□□□□ -1.54
HOXC4-201ENST00000303406 KRTAP12-4P60329 112 aa5.38□□□□□ -1.55
HOXC4-201ENST00000303406 LCE3DQ9BYE3 92 aa5.3□□□□□ -1.56
HOXC4-201ENST00000303406 KRTAP6-2Q3LI66 62 aa5.23□□□□□ -1.57
HOXC4-201ENST00000303406 LCE3EQ5T5B0 92 aa5.21□□□□□ -1.58
HOXC4-201ENST00000303406 LCE1EQ5T753 118 aa5.13□□□□□ -1.59
HOXC4-201ENST00000303406 KRTAP5-1Q6L8H4 278 aa5.08□□□□□ -1.6
HOXC4-201ENST00000303406 KRTAP20-2Q3LI61 65 aa5.05□□□□□ -1.6
HOXC4-201ENST00000303406 MT4P47944 62 aa5.04□□□□□ -1.6
HOXC4-201ENST00000303406 KRTAP20-1Q3LI63 56 aa5.04□□□□□ -1.6
HOXC4-201ENST00000303406 KRTAP5-2Q701N4 177 aa5.02□□□□□ -1.61
HOXC4-201ENST00000303406 KRTAP4-4Q9BYR3 166 aa4.93□□□□□ -1.62
HOXC4-201ENST00000303406 HMCN1Q96RW7 5635 aa4.82□□□□□ -1.64
HOXC4-201ENST00000303406 OBSCNQ5VST9 7968 aa4.71□□□□□ -1.66
HOXC4-201ENST00000303406 PRM1P04553 51 aa4.68□□□□□ -1.66
HOXC4-201ENST00000303406 GPR98Q8WXG9 6306 aa4.59□□□□□ -1.67
HOXC4-201ENST00000303406 KRTAP5-10Q6L8G5 202 aa4.27□□□□□ -1.73
HOXC4-201ENST00000303406 MUC5ACP98088 5654 aa4.24□□□□□ -1.73
HOXC4-201ENST00000303406 LCE1CQ5T751 118 aa4.21□□□□□ -1.73
HOXC4-201ENST00000303406 LCE1BQ5T7P3 118 aa4.21□□□□□ -1.73
HOXC4-201ENST00000303406 AHNAK2Q8IVF2 5795 aa4.15□□□□□ -1.75
HOXC4-201ENST00000303406 KRTAP5-8O75690 187 aa4.13□□□□□ -1.75
HOXC4-201ENST00000303406 KRTAP5-7Q6L8G8 165 aa4.12□□□□□ -1.75
HOXC4-201ENST00000303406 KRTAP21-2Q3LI59 83 aa3.78□□□□□ -1.8
HOXC4-201ENST00000303406 AHNAKQ09666 5890 aaKnown RBP3.53□□□□□ -1.85
HOXC4-201ENST00000303406 MUC5BQ9HC84 5762 aaPredicted RBP3.51□□□□□ -1.85
HOXC4-201ENST00000303406 PHGR1C9JFL3 82 aa3.15□□□□□ -1.9
HOXC4-201ENST00000303406 KRTAP21-1Q3LI58 79 aa2.97□□□□□ -1.93
HOXC4-201ENST00000303406 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
HOXC4-201ENST00000303406 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 6 ms