RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 MT1LQ93083 61 aa3.65□□□□□ -1.82
ZNF558-201ENST00000301475 MACF1Q9UPN3 7388 aaKnown RBP3.63□□□□□ -1.83
ZNF558-201ENST00000301475 MUC12Q9UKN1 5478 aa3.62□□□□□ -1.83
ZNF558-201ENST00000301475 MT1EP04732 61 aa3.61□□□□□ -1.83
ZNF558-201ENST00000301475 KRTAP19-6Q3LI70 58 aa3.61□□□□□ -1.83
ZNF558-201ENST00000301475 SYNE2Q8WXH0 6885 aaKnown RBP3.6□□□□□ -1.83
ZNF558-201ENST00000301475 KRTAP19-4Q3LI73 84 aa3.56□□□□□ -1.84
ZNF558-201ENST00000301475 DSTQ03001 7570 aaKnown RBP3.55□□□□□ -1.84
ZNF558-201ENST00000301475 KRTAP9-2Q9BYQ4 174 aa3.54□□□□□ -1.84
ZNF558-201ENST00000301475 KRTAP4-3Q9BYR4 195 aa3.5□□□□□ -1.85
ZNF558-201ENST00000301475 KRTAP12-4P60329 112 aa3.49□□□□□ -1.85
ZNF558-201ENST00000301475 MT1GP13640 62 aa3.46□□□□□ -1.86
ZNF558-201ENST00000301475 MDN1Q9NU22 5596 aa3.44□□□□□ -1.86
ZNF558-201ENST00000301475 CRCT1Q9UGL9 99 aa3.42□□□□□ -1.86
ZNF558-201ENST00000301475 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.41□□□□□ -1.86
ZNF558-201ENST00000301475 SPRR2FQ96RM1 72 aa3.39□□□□□ -1.87
ZNF558-201ENST00000301475 KRTAP9-6A0A140TA67 174 aa3.38□□□□□ -1.87
ZNF558-201ENST00000301475 MT1MQ8N339 61 aa3.36□□□□□ -1.87
ZNF558-201ENST00000301475 KRTAP19-3Q7Z4W3 81 aa3.3□□□□□ -1.88
ZNF558-201ENST00000301475 KRTAP4-9Q9BYQ8 210 aa3.3□□□□□ -1.88
ZNF558-201ENST00000301475 LCE3BQ5TA77 95 aa3.28□□□□□ -1.88
ZNF558-201ENST00000301475 SYNE1Q8NF91 8797 aaKnown RBP3.26□□□□□ -1.89
ZNF558-201ENST00000301475 KRTAP4-12Q9BQ66 201 aa3.24□□□□□ -1.89
ZNF558-201ENST00000301475 KRTAP9-9Q9BYP9 154 aa3.22□□□□□ -1.89
ZNF558-201ENST00000301475 KRTAP9-4Q9BYQ2 154 aa3.22□□□□□ -1.89
ZNF558-201ENST00000301475 LCE5AQ5TCM9 118 aa3.22□□□□□ -1.89
ZNF558-201ENST00000301475 KRTAP9-7A8MTY7 169 aa3.17□□□□□ -1.9
ZNF558-201ENST00000301475 MT1AP04731 61 aa3.16□□□□□ -1.9
ZNF558-201ENST00000301475 KRTAP5-5Q701N2 237 aaPredicted RBP3.15□□□□□ -1.91
ZNF558-201ENST00000301475 PRM1P04553 51 aa3.14□□□□□ -1.91
ZNF558-201ENST00000301475 SPRR2EP22531 72 aa3.14□□□□□ -1.91
ZNF558-201ENST00000301475 SPRR2BP35325 72 aa3.14□□□□□ -1.91
ZNF558-201ENST00000301475 SPRR2AP35326 72 aa3.14□□□□□ -1.91
ZNF558-201ENST00000301475 LCE1AQ5T7P2 110 aa3.13□□□□□ -1.91
ZNF558-201ENST00000301475 OBSCNQ5VST9 7968 aa3.13□□□□□ -1.91
ZNF558-201ENST00000301475 KRTAP6-1Q3LI64 71 aa3.13□□□□□ -1.91
ZNF558-201ENST00000301475 KRTAP5-9P26371 169 aa3.12□□□□□ -1.91
ZNF558-201ENST00000301475 LCE3DQ9BYE3 92 aa3.12□□□□□ -1.91
ZNF558-201ENST00000301475 LCE3EQ5T5B0 92 aa3.1□□□□□ -1.91
ZNF558-201ENST00000301475 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
ZNF558-201ENST00000301475 LCE4AQ5TA78 99 aa3.08□□□□□ -1.92
ZNF558-201ENST00000301475 LCE1DQ5T752 114 aa3.03□□□□□ -1.92
ZNF558-201ENST00000301475 KRTAP6-3Q3LI67 103 aa3.01□□□□□ -1.93
ZNF558-201ENST00000301475 SPRR2DP22532 72 aa3.01□□□□□ -1.93
ZNF558-201ENST00000301475 KRTAP2-2Q9BYT5 123 aa2.98□□□□□ -1.93
ZNF558-201ENST00000301475 KRTAP6-2Q3LI66 62 aa2.96□□□□□ -1.94
ZNF558-201ENST00000301475 NEBP20929 6669 aa2.95□□□□□ -1.94
ZNF558-201ENST00000301475 KRTAP4-2Q9BYR5 136 aa2.94□□□□□ -1.94
ZNF558-201ENST00000301475 LCE1EQ5T753 118 aa2.93□□□□□ -1.94
ZNF558-201ENST00000301475 KRTAP4-11Q9BYQ6 195 aa2.85□□□□□ -1.95
ZNF558-201ENST00000301475 MT4P47944 62 aa2.72□□□□□ -1.97
ZNF558-201ENST00000301475 MT3P25713 68 aa2.68□□□□□ -1.98
ZNF558-201ENST00000301475 KRTAP5-3Q6L8H2 238 aa2.68□□□□□ -1.98
ZNF558-201ENST00000301475 HMCN1Q96RW7 5635 aa2.66□□□□□ -1.98
ZNF558-201ENST00000301475 KRTAP5-4Q6L8H1 288 aa2.61□□□□□ -1.99
ZNF558-201ENST00000301475 KRTAP20-1Q3LI63 56 aa2.58□□□□□ -2
ZNF558-201ENST00000301475 KRTAP20-2Q3LI61 65 aa2.52□□□□□ -2.01
ZNF558-201ENST00000301475 MUC5ACP98088 5654 aa2.44□□□□□ -2.02
ZNF558-201ENST00000301475 KRTAP5-2Q701N4 177 aa2.38□□□□□ -2.03
ZNF558-201ENST00000301475 MUC5BQ9HC84 5762 aaPredicted RBP2.34□□□□□ -2.03
ZNF558-201ENST00000301475 MUC19Q7Z5P9 8384 aa2.32□□□□□ -2.04
ZNF558-201ENST00000301475 KRTAP5-10Q6L8G5 202 aa2.28□□□□□ -2.04
ZNF558-201ENST00000301475 LCE1BQ5T7P3 118 aa2.23□□□□□ -2.05
ZNF558-201ENST00000301475 KRTAP5-1Q6L8H4 278 aa2.19□□□□□ -2.06
ZNF558-201ENST00000301475 AHNAK2Q8IVF2 5795 aa2.18□□□□□ -2.06
ZNF558-201ENST00000301475 GPR98Q8WXG9 6306 aa2.18□□□□□ -2.06
ZNF558-201ENST00000301475 KRTAP5-8O75690 187 aa2.06□□□□□ -2.08
ZNF558-201ENST00000301475 LCE1CQ5T751 118 aa2.01□□□□□ -2.09
ZNF558-201ENST00000301475 KRTAP21-2Q3LI59 83 aa2□□□□□ -2.09
ZNF558-201ENST00000301475 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
ZNF558-201ENST00000301475 KRTAP5-11Q6L8G4 156 aa1.95□□□□□ -2.1
ZNF558-201ENST00000301475 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.95□□□□□ -2.1
ZNF558-201ENST00000301475 KRTAP5-7Q6L8G8 165 aa1.88□□□□□ -2.11
ZNF558-201ENST00000301475 KRTAP4-4Q9BYR3 166 aa1.88□□□□□ -2.11
ZNF558-201ENST00000301475 AHNAKQ09666 5890 aaKnown RBP1.78□□□□□ -2.12
ZNF558-201ENST00000301475 PHGR1C9JFL3 82 aa1.53□□□□□ -2.17
ZNF558-201ENST00000301475 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 10.7 ms