RNA–Protein interactions for RNA: ENST00000298454.3

VSTM4-201, Transcript of V-set and transmembrane domain containing 4, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VSTM4, Length 2,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSTM4-201ENST00000298454 KRTAP19-4Q3LI73 84 aa7.87□□□□□ -1.15
VSTM4-201ENST00000298454 SPRR2FQ96RM1 72 aa7.84□□□□□ -1.15
VSTM4-201ENST00000298454 SYNE2Q8WXH0 6885 aaKnown RBP7.82□□□□□ -1.16
VSTM4-201ENST00000298454 KRTAP19-3Q7Z4W3 81 aa7.79□□□□□ -1.16
VSTM4-201ENST00000298454 KRTAP9-6A8MVA2 160 aa7.76□□□□□ -1.17
VSTM4-201ENST00000298454 MT1GP13640 62 aa7.71□□□□□ -1.18
VSTM4-201ENST00000298454 MT1MQ8N339 61 aa7.68□□□□□ -1.18
VSTM4-201ENST00000298454 KRTAP4-3Q9BYR4 195 aa7.66□□□□□ -1.18
VSTM4-201ENST00000298454 LCE5AQ5TCM9 118 aa7.62□□□□□ -1.19
VSTM4-201ENST00000298454 KRTAP5-9P26371 169 aa7.6□□□□□ -1.19
VSTM4-201ENST00000298454 MDN1Q9NU22 5596 aa7.52□□□□□ -1.21
VSTM4-201ENST00000298454 KRTAP9-6A0A140TA67 174 aa7.52□□□□□ -1.21
VSTM4-201ENST00000298454 LOC100996750A0A140TA64 210 aa7.46□□□□□ -1.22
VSTM4-201ENST00000298454 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.46□□□□□ -1.22
VSTM4-201ENST00000298454 LCE1AQ5T7P2 110 aa7.44□□□□□ -1.22
VSTM4-201ENST00000298454 DSTQ03001 7570 aaKnown RBP7.39□□□□□ -1.23
VSTM4-201ENST00000298454 SPRR2EP22531 72 aa7.35□□□□□ -1.23
VSTM4-201ENST00000298454 SPRR2BP35325 72 aa7.35□□□□□ -1.23
VSTM4-201ENST00000298454 SPRR2AP35326 72 aa7.35□□□□□ -1.23
VSTM4-201ENST00000298454 KRTAP6-3Q3LI67 103 aa7.32□□□□□ -1.24
VSTM4-201ENST00000298454 KRTAP2-3P0C7H8 128 aa7.21□□□□□ -1.26
VSTM4-201ENST00000298454 KRTAP2-4Q9BYR9 128 aa7.21□□□□□ -1.26
VSTM4-201ENST00000298454 KRTAP2-1Q9BYU5 128 aa7.21□□□□□ -1.26
VSTM4-201ENST00000298454 SPRR2DP22532 72 aa7.06□□□□□ -1.28
VSTM4-201ENST00000298454 INE1O15225 51 aa6.98□□□□□ -1.29
VSTM4-201ENST00000298454 KRTAP9-7A8MTY7 169 aa6.93□□□□□ -1.3
VSTM4-201ENST00000298454 KRTAP5-5Q701N2 237 aaPredicted RBP6.89□□□□□ -1.31
VSTM4-201ENST00000298454 NEBP20929 6669 aa6.86□□□□□ -1.31
VSTM4-201ENST00000298454 KRTAP6-1Q3LI64 71 aa6.82□□□□□ -1.32
VSTM4-201ENST00000298454 MT1AP04731 61 aa6.8□□□□□ -1.32
VSTM4-201ENST00000298454 LCE3BQ5TA77 95 aa6.76□□□□□ -1.33
VSTM4-201ENST00000298454 SYNE1Q8NF91 8797 aaKnown RBP6.61□□□□□ -1.35
VSTM4-201ENST00000298454 KRTAP9-4Q9BYQ2 154 aa6.45□□□□□ -1.38
VSTM4-201ENST00000298454 KRTAP4-9Q9BYQ8 210 aa6.45□□□□□ -1.38
VSTM4-201ENST00000298454 KRTAP5-4Q6L8H1 288 aa6.41□□□□□ -1.38
VSTM4-201ENST00000298454 KRTAP12-4P60329 112 aa6.29□□□□□ -1.4
VSTM4-201ENST00000298454 KRTAP6-2Q3LI66 62 aa6.23□□□□□ -1.41
VSTM4-201ENST00000298454 KRTAP2-2Q9BYT5 123 aa6.23□□□□□ -1.41
VSTM4-201ENST00000298454 MT4P47944 62 aa6.19□□□□□ -1.42
VSTM4-201ENST00000298454 LCE4AQ5TA78 99 aa6.18□□□□□ -1.42
VSTM4-201ENST00000298454 KRTAP4-6Q9BYQ5 205 aa6.18□□□□□ -1.42
VSTM4-201ENST00000298454 KRTAP20-1Q3LI63 56 aa6.15□□□□□ -1.43
VSTM4-201ENST00000298454 MT3P25713 68 aa6.14□□□□□ -1.43
VSTM4-201ENST00000298454 LCE3DQ9BYE3 92 aa6.13□□□□□ -1.43
VSTM4-201ENST00000298454 KRTAP20-2Q3LI61 65 aa6.02□□□□□ -1.45
VSTM4-201ENST00000298454 LCE1DQ5T752 114 aa6□□□□□ -1.45
VSTM4-201ENST00000298454 LCE3EQ5T5B0 92 aa5.98□□□□□ -1.45
VSTM4-201ENST00000298454 HMCN1Q96RW7 5635 aa5.98□□□□□ -1.45
VSTM4-201ENST00000298454 OBSCNQ5VST9 7968 aa5.86□□□□□ -1.47
VSTM4-201ENST00000298454 KRTAP5-2Q701N4 177 aa5.86□□□□□ -1.47
VSTM4-201ENST00000298454 KRTAP5-3Q6L8H2 238 aa5.78□□□□□ -1.48
VSTM4-201ENST00000298454 PRM1P04553 51 aa5.4□□□□□ -1.55
VSTM4-201ENST00000298454 LCE1EQ5T753 118 aa5.22□□□□□ -1.57
VSTM4-201ENST00000298454 KRTAP4-11Q9BYQ6 195 aa5.15□□□□□ -1.59
VSTM4-201ENST00000298454 AHNAK2Q8IVF2 5795 aa5.1□□□□□ -1.59
VSTM4-201ENST00000298454 KRTAP4-12Q9BQ66 201 aa5.08□□□□□ -1.6
VSTM4-201ENST00000298454 KRTAP5-1Q6L8H4 278 aa5.07□□□□□ -1.6
VSTM4-201ENST00000298454 MUC5ACP98088 5654 aa5.06□□□□□ -1.6
VSTM4-201ENST00000298454 LCE1BQ5T7P3 118 aa5.04□□□□□ -1.6
VSTM4-201ENST00000298454 KRTAP5-10Q6L8G5 202 aa4.97□□□□□ -1.61
VSTM4-201ENST00000298454 KRTAP5-8O75690 187 aa4.95□□□□□ -1.62
VSTM4-201ENST00000298454 KRTAP4-2Q9BYR5 136 aa4.94□□□□□ -1.62
VSTM4-201ENST00000298454 LCE1CQ5T751 118 aa4.91□□□□□ -1.62
VSTM4-201ENST00000298454 KRTAP9-9Q9BYP9 154 aa4.86□□□□□ -1.63
VSTM4-201ENST00000298454 KRTAP5-7Q6L8G8 165 aa4.78□□□□□ -1.64
VSTM4-201ENST00000298454 GPR98Q8WXG9 6306 aa4.6□□□□□ -1.67
VSTM4-201ENST00000298454 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.59□□□□□ -1.67
VSTM4-201ENST00000298454 KRTAP21-2Q3LI59 83 aa4.44□□□□□ -1.7
VSTM4-201ENST00000298454 MUC5BQ9HC84 5762 aaPredicted RBP4.33□□□□□ -1.72
VSTM4-201ENST00000298454 KRTAP5-11Q6L8G4 156 aa4.29□□□□□ -1.72
VSTM4-201ENST00000298454 KRTAP4-4Q9BYR3 166 aa4.02□□□□□ -1.77
VSTM4-201ENST00000298454 AHNAKQ09666 5890 aaKnown RBP3.77□□□□□ -1.81
VSTM4-201ENST00000298454 LCE1FQ5T754 118 aa3.73□□□□□ -1.81
VSTM4-201ENST00000298454 PHGR1C9JFL3 82 aa3.7□□□□□ -1.82
VSTM4-201ENST00000298454 MUC19Q7Z5P9 8384 aa3.47□□□□□ -1.85
VSTM4-201ENST00000298454 KRTAP21-1Q3LI58 79 aa3.31□□□□□ -1.88
VSTM4-201ENST00000298454 MUC16Q8WXI7 14507 aa2.38□□□□□ -2.03
Retrieved 77 of 20,778 RNA–protein pairs in 75.5 ms