RNA–Protein interactions for RNA: ENST00000290894.12

SHF-201, Transcript of Src homology 2 domain containing F, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SHF, Length 2,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHF-201ENST00000290894 KRTAP4-3Q9BYR4 195 aa6.47□□□□□ -1.37
SHF-201ENST00000290894 SYNE2Q8WXH0 6885 aaKnown RBP6.43□□□□□ -1.38
SHF-201ENST00000290894 DSTQ03001 7570 aaKnown RBP6.43□□□□□ -1.38
SHF-201ENST00000290894 KRTAP9-2Q9BYQ4 174 aa6.42□□□□□ -1.38
SHF-201ENST00000290894 SPRR2FQ96RM1 72 aa6.4□□□□□ -1.38
SHF-201ENST00000290894 KRTAP19-4Q3LI73 84 aa6.37□□□□□ -1.39
SHF-201ENST00000290894 KRTAP19-3Q7Z4W3 81 aa6.37□□□□□ -1.39
SHF-201ENST00000290894 LOC100996750A0A140TA64 210 aa6.36□□□□□ -1.39
SHF-201ENST00000290894 MT1MQ8N339 61 aa6.33□□□□□ -1.4
SHF-201ENST00000290894 MT1GP13640 62 aa6.3□□□□□ -1.4
SHF-201ENST00000290894 CRCT1Q9UGL9 99 aa6.24□□□□□ -1.41
SHF-201ENST00000290894 MDN1Q9NU22 5596 aa6.23□□□□□ -1.41
SHF-201ENST00000290894 LCE5AQ5TCM9 118 aa6.2□□□□□ -1.42
SHF-201ENST00000290894 KRTAP2-3P0C7H8 128 aa6.19□□□□□ -1.42
SHF-201ENST00000290894 KRTAP2-4Q9BYR9 128 aa6.19□□□□□ -1.42
SHF-201ENST00000290894 KRTAP2-1Q9BYU5 128 aa6.19□□□□□ -1.42
SHF-201ENST00000290894 LCE1AQ5T7P2 110 aa5.97□□□□□ -1.45
SHF-201ENST00000290894 KRTAP5-9P26371 169 aa5.97□□□□□ -1.45
SHF-201ENST00000290894 SPRR2EP22531 72 aa5.9□□□□□ -1.47
SHF-201ENST00000290894 SPRR2BP35325 72 aa5.9□□□□□ -1.47
SHF-201ENST00000290894 SPRR2AP35326 72 aa5.9□□□□□ -1.47
SHF-201ENST00000290894 SYNE1Q8NF91 8797 aaKnown RBP5.84□□□□□ -1.47
SHF-201ENST00000290894 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.75□□□□□ -1.49
SHF-201ENST00000290894 LCE3BQ5TA77 95 aa5.75□□□□□ -1.49
SHF-201ENST00000290894 KRTAP6-1Q3LI64 71 aa5.72□□□□□ -1.49
SHF-201ENST00000290894 KRTAP9-6A0A140TA67 174 aa5.65□□□□□ -1.5
SHF-201ENST00000290894 SPRR2DP22532 72 aa5.65□□□□□ -1.51
SHF-201ENST00000290894 KRTAP6-3Q3LI67 103 aa5.62□□□□□ -1.51
SHF-201ENST00000290894 KRTAP4-9Q9BYQ8 210 aa5.6□□□□□ -1.51
SHF-201ENST00000290894 KRTAP5-5Q701N2 237 aaPredicted RBP5.6□□□□□ -1.51
SHF-201ENST00000290894 MT1AP04731 61 aa5.59□□□□□ -1.51
SHF-201ENST00000290894 KRTAP12-4P60329 112 aa5.5□□□□□ -1.53
SHF-201ENST00000290894 OBSCNQ5VST9 7968 aa5.4□□□□□ -1.55
SHF-201ENST00000290894 NEBP20929 6669 aa5.35□□□□□ -1.55
SHF-201ENST00000290894 KRTAP2-2Q9BYT5 123 aa5.31□□□□□ -1.56
SHF-201ENST00000290894 KRTAP9-4Q9BYQ2 154 aa5.3□□□□□ -1.56
SHF-201ENST00000290894 KRTAP9-7A8MTY7 169 aa5.28□□□□□ -1.56
SHF-201ENST00000290894 LCE3DQ9BYE3 92 aa5.25□□□□□ -1.57
SHF-201ENST00000290894 KRTAP6-2Q3LI66 62 aa5.19□□□□□ -1.58
SHF-201ENST00000290894 LCE3EQ5T5B0 92 aa5.12□□□□□ -1.59
SHF-201ENST00000290894 KRTAP5-4Q6L8H1 288 aa5.07□□□□□ -1.6
SHF-201ENST00000290894 MT3P25713 68 aa5.04□□□□□ -1.6
SHF-201ENST00000290894 MT4P47944 62 aa5.04□□□□□ -1.6
SHF-201ENST00000290894 KRTAP4-6Q9BYQ5 205 aa5.03□□□□□ -1.6
SHF-201ENST00000290894 HMCN1Q96RW7 5635 aa4.87□□□□□ -1.63
SHF-201ENST00000290894 PRM1P04553 51 aa4.83□□□□□ -1.64
SHF-201ENST00000290894 KRTAP20-2Q3LI61 65 aa4.82□□□□□ -1.64
SHF-201ENST00000290894 LCE4AQ5TA78 99 aa4.82□□□□□ -1.64
SHF-201ENST00000290894 LCE1DQ5T752 114 aa4.77□□□□□ -1.65
SHF-201ENST00000290894 LCE1EQ5T753 118 aa4.69□□□□□ -1.66
SHF-201ENST00000290894 KRTAP5-2Q701N4 177 aa4.68□□□□□ -1.66
SHF-201ENST00000290894 KRTAP20-1Q3LI63 56 aa4.66□□□□□ -1.66
SHF-201ENST00000290894 KRTAP5-3Q6L8H2 238 aa4.58□□□□□ -1.68
SHF-201ENST00000290894 MUC5ACP98088 5654 aa4.29□□□□□ -1.72
SHF-201ENST00000290894 LCE1FQ5T754 118 aa4.24□□□□□ -1.73
SHF-201ENST00000290894 LCE1BQ5T7P3 118 aa4.23□□□□□ -1.73
SHF-201ENST00000290894 KRTAP4-11Q9BYQ6 195 aa4.08□□□□□ -1.76
SHF-201ENST00000290894 KRTAP5-1Q6L8H4 278 aa4.06□□□□□ -1.76
SHF-201ENST00000290894 KRTAP4-2Q9BYR5 136 aa4.02□□□□□ -1.77
SHF-201ENST00000290894 KRTAP5-10Q6L8G5 202 aa3.98□□□□□ -1.77
SHF-201ENST00000290894 AHNAK2Q8IVF2 5795 aa3.96□□□□□ -1.78
SHF-201ENST00000290894 LCE1CQ5T751 118 aa3.95□□□□□ -1.78
SHF-201ENST00000290894 KRTAP5-8O75690 187 aa3.9□□□□□ -1.78
SHF-201ENST00000290894 KRTAP5-7Q6L8G8 165 aa3.7□□□□□ -1.82
SHF-201ENST00000290894 KRTAP21-2Q3LI59 83 aa3.68□□□□□ -1.82
SHF-201ENST00000290894 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.67□□□□□ -1.82
SHF-201ENST00000290894 MUC5BQ9HC84 5762 aaPredicted RBP3.63□□□□□ -1.83
SHF-201ENST00000290894 GPR98Q8WXG9 6306 aa3.58□□□□□ -1.84
SHF-201ENST00000290894 KRTAP4-4Q9BYR3 166 aa3.47□□□□□ -1.85
SHF-201ENST00000290894 KRTAP4-12Q9BQ66 201 aa3.43□□□□□ -1.86
SHF-201ENST00000290894 KRTAP5-11Q6L8G4 156 aa3.42□□□□□ -1.86
SHF-201ENST00000290894 KRTAP9-9Q9BYP9 154 aa3.38□□□□□ -1.87
SHF-201ENST00000290894 MUC19Q7Z5P9 8384 aa3.3□□□□□ -1.88
SHF-201ENST00000290894 KRTAP21-1Q3LI58 79 aa3.17□□□□□ -1.9
SHF-201ENST00000290894 PHGR1C9JFL3 82 aa2.98□□□□□ -1.93
SHF-201ENST00000290894 AHNAKQ09666 5890 aaKnown RBP2.83□□□□□ -1.96
SHF-201ENST00000290894 MUC16Q8WXI7 14507 aa1.93□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 12.1 ms