RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 KRTAP12-3P60328 96 aa3.99□□□□□ -1.77
UPF3B-201ENST00000276201 KRTAP9-9Q9BYP9 154 aa3.98□□□□□ -1.77
UPF3B-201ENST00000276201 KRTAP9-4Q9BYQ2 154 aa3.98□□□□□ -1.77
UPF3B-201ENST00000276201 KRTAP10-12P60413 245 aa3.97□□□□□ -1.77
UPF3B-201ENST00000276201 KRTAP4-2Q9BYR5 136 aa3.97□□□□□ -1.77
UPF3B-201ENST00000276201 KRTAP4-9Q9BYQ8 210 aa3.9□□□□□ -1.78
UPF3B-201ENST00000276201 KRTAP5-9P26371 169 aa3.89□□□□□ -1.79
UPF3B-201ENST00000276201 LCE1DQ5T752 114 aa3.89□□□□□ -1.79
UPF3B-201ENST00000276201 KRTAP19-4Q3LI73 84 aa3.85□□□□□ -1.79
UPF3B-201ENST00000276201 KRTAP10-7P60409 375 aaPredicted RBP3.85□□□□□ -1.79
UPF3B-201ENST00000276201 KMT2DO14686 5537 aa3.85□□□□□ -1.79
UPF3B-201ENST00000276201 NEBP20929 6669 aa3.82□□□□□ -1.8
UPF3B-201ENST00000276201 MUC12Q9UKN1 5478 aa3.82□□□□□ -1.8
UPF3B-201ENST00000276201 SPRR2FQ96RM1 72 aa3.8□□□□□ -1.8
UPF3B-201ENST00000276201 LCE3CQ5T5A8 94 aa3.79□□□□□ -1.8
UPF3B-201ENST00000276201 MDN1Q9NU22 5596 aa3.76□□□□□ -1.81
UPF3B-201ENST00000276201 KRTAP4-12Q9BQ66 201 aa3.73□□□□□ -1.81
UPF3B-201ENST00000276201 KRTAP19-5Q3LI72 72 aa3.72□□□□□ -1.81
UPF3B-201ENST00000276201 SPRR2EP22531 72 aa3.71□□□□□ -1.81
UPF3B-201ENST00000276201 SPRR2BP35325 72 aa3.71□□□□□ -1.81
UPF3B-201ENST00000276201 SPRR2AP35326 72 aa3.71□□□□□ -1.81
UPF3B-201ENST00000276201 LCE1AQ5T7P2 110 aa3.69□□□□□ -1.82
UPF3B-201ENST00000276201 KRTAP2-3P0C7H8 128 aa3.68□□□□□ -1.82
UPF3B-201ENST00000276201 KRTAP2-4Q9BYR9 128 aa3.68□□□□□ -1.82
UPF3B-201ENST00000276201 KRTAP2-1Q9BYU5 128 aa3.68□□□□□ -1.82
UPF3B-201ENST00000276201 KRTAP20-1Q3LI63 56 aa3.66□□□□□ -1.82
UPF3B-201ENST00000276201 KRTAP9-6A8MVA2 160 aa3.61□□□□□ -1.83
UPF3B-201ENST00000276201 KRTAP19-7Q3SYF9 63 aa3.6□□□□□ -1.83
UPF3B-201ENST00000276201 SPRR2DP22532 72 aa3.59□□□□□ -1.84
UPF3B-201ENST00000276201 MT1EP04732 61 aa3.56□□□□□ -1.84
UPF3B-201ENST00000276201 KRTAP4-11Q9BYQ6 195 aa3.54□□□□□ -1.84
UPF3B-201ENST00000276201 LCE5AQ5TCM9 118 aa3.5□□□□□ -1.85
UPF3B-201ENST00000276201 KRTAP19-3Q7Z4W3 81 aa3.5□□□□□ -1.85
UPF3B-201ENST00000276201 KRTAP2-2Q9BYT5 123 aa3.48□□□□□ -1.85
UPF3B-201ENST00000276201 LCE4AQ5TA78 99 aa3.47□□□□□ -1.85
UPF3B-201ENST00000276201 MT1LQ93083 61 aa3.47□□□□□ -1.85
UPF3B-201ENST00000276201 MT1GP13640 62 aa3.42□□□□□ -1.86
UPF3B-201ENST00000276201 MT1MQ8N339 61 aa3.38□□□□□ -1.87
UPF3B-201ENST00000276201 DSTQ03001 7570 aaKnown RBP3.31□□□□□ -1.88
UPF3B-201ENST00000276201 KRTAP4-3Q9BYR4 195 aa3.31□□□□□ -1.88
UPF3B-201ENST00000276201 KRTAP12-4P60329 112 aa3.19□□□□□ -1.9
UPF3B-201ENST00000276201 KRTAP5-4Q6L8H1 288 aa3.16□□□□□ -1.9
UPF3B-201ENST00000276201 MT4P47944 62 aa3.13□□□□□ -1.91
UPF3B-201ENST00000276201 MT1AP04731 61 aa3.12□□□□□ -1.91
UPF3B-201ENST00000276201 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.11□□□□□ -1.91
UPF3B-201ENST00000276201 KRTAP5-5Q701N2 237 aaPredicted RBP3.1□□□□□ -1.91
UPF3B-201ENST00000276201 HMCN1Q96RW7 5635 aa3.09□□□□□ -1.91
UPF3B-201ENST00000276201 MT3P25713 68 aa3.01□□□□□ -1.93
UPF3B-201ENST00000276201 GPR98Q8WXG9 6306 aa3□□□□□ -1.93
UPF3B-201ENST00000276201 LCE1FQ5T754 118 aa2.98□□□□□ -1.93
UPF3B-201ENST00000276201 KRTAP20-2Q3LI61 65 aa2.97□□□□□ -1.93
UPF3B-201ENST00000276201 AHNAK2Q8IVF2 5795 aa2.94□□□□□ -1.94
UPF3B-201ENST00000276201 LCE3EQ5T5B0 92 aa2.94□□□□□ -1.94
UPF3B-201ENST00000276201 LCE3DQ9BYE3 92 aa2.93□□□□□ -1.94
UPF3B-201ENST00000276201 KRTAP6-1Q3LI64 71 aa2.9□□□□□ -1.95
UPF3B-201ENST00000276201 SYNE1Q8NF91 8797 aaKnown RBP2.88□□□□□ -1.95
UPF3B-201ENST00000276201 KRTAP5-10Q6L8G5 202 aa2.87□□□□□ -1.95
UPF3B-201ENST00000276201 PRM1P04553 51 aa2.84□□□□□ -1.95
UPF3B-201ENST00000276201 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
UPF3B-201ENST00000276201 KRTAP6-2Q3LI66 62 aa2.74□□□□□ -1.97
UPF3B-201ENST00000276201 KRTAP5-7Q6L8G8 165 aa2.74□□□□□ -1.97
UPF3B-201ENST00000276201 KRTAP5-8O75690 187 aa2.59□□□□□ -2
UPF3B-201ENST00000276201 OBSCNQ5VST9 7968 aa2.5□□□□□ -2.01
UPF3B-201ENST00000276201 KRTAP5-1Q6L8H4 278 aa2.47□□□□□ -2.01
UPF3B-201ENST00000276201 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
UPF3B-201ENST00000276201 MUC5ACP98088 5654 aa2.4□□□□□ -2.02
UPF3B-201ENST00000276201 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.03
UPF3B-201ENST00000276201 LCE1EQ5T753 118 aa2.4□□□□□ -2.03
UPF3B-201ENST00000276201 AHNAKQ09666 5890 aaKnown RBP2.38□□□□□ -2.03
UPF3B-201ENST00000276201 LCE1BQ5T7P3 118 aa2.25□□□□□ -2.05
UPF3B-201ENST00000276201 KRTAP5-11Q6L8G4 156 aa2.24□□□□□ -2.05
UPF3B-201ENST00000276201 LCE1CQ5T751 118 aa2.23□□□□□ -2.05
UPF3B-201ENST00000276201 KRTAP21-1Q3LI58 79 aa1.91□□□□□ -2.1
UPF3B-201ENST00000276201 KRTAP21-2Q3LI59 83 aa1.91□□□□□ -2.1
UPF3B-201ENST00000276201 PHGR1C9JFL3 82 aa1.74□□□□□ -2.13
UPF3B-201ENST00000276201 MUC19Q7Z5P9 8384 aa1.52□□□□□ -2.17
UPF3B-201ENST00000276201 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 50.8 ms