RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 KRTAP9-6A8MVA2 160 aa3.3□□□□□ -1.88
MSH4-201ENST00000263187 FCGBPQ9Y6R7 5405 aaPredicted RBP3.27□□□□□ -1.89
MSH4-201ENST00000263187 INE1O15225 51 aa3.24□□□□□ -1.89
MSH4-201ENST00000263187 MUC12Q9UKN1 5478 aa3.23□□□□□ -1.89
MSH4-201ENST00000263187 DSTQ03001 7570 aaKnown RBP3.23□□□□□ -1.89
MSH4-201ENST00000263187 KRTAP19-7Q3SYF9 63 aa3.22□□□□□ -1.89
MSH4-201ENST00000263187 KRTAP6-3Q3LI67 103 aa3.2□□□□□ -1.9
MSH4-201ENST00000263187 MACF1Q9UPN3 7388 aaKnown RBP3.15□□□□□ -1.9
MSH4-201ENST00000263187 HMCN1Q96RW7 5635 aa3.14□□□□□ -1.91
MSH4-201ENST00000263187 KRTAP4-3Q9BYR4 195 aa3.13□□□□□ -1.91
MSH4-201ENST00000263187 MT1LQ93083 61 aa3.12□□□□□ -1.91
MSH4-201ENST00000263187 MT1EP04732 61 aa3.11□□□□□ -1.91
MSH4-201ENST00000263187 SYNE2Q8WXH0 6885 aaKnown RBP3.08□□□□□ -1.92
MSH4-201ENST00000263187 KRTAP2-3P0C7H8 128 aa3.05□□□□□ -1.92
MSH4-201ENST00000263187 MT1GP13640 62 aa3.05□□□□□ -1.92
MSH4-201ENST00000263187 KRTAP2-4Q9BYR9 128 aa3.05□□□□□ -1.92
MSH4-201ENST00000263187 KRTAP2-1Q9BYU5 128 aa3.05□□□□□ -1.92
MSH4-201ENST00000263187 SYNE1Q8NF91 8797 aaKnown RBP3.03□□□□□ -1.92
MSH4-201ENST00000263187 KRTAP20-1Q3LI63 56 aa3□□□□□ -1.93
MSH4-201ENST00000263187 KRTAP4-2Q9BYR5 136 aa2.99□□□□□ -1.93
MSH4-201ENST00000263187 KRTAP5-9P26371 169 aa2.99□□□□□ -1.93
MSH4-201ENST00000263187 NEBP20929 6669 aa2.98□□□□□ -1.93
MSH4-201ENST00000263187 OBSCNQ5VST9 7968 aa2.95□□□□□ -1.94
MSH4-201ENST00000263187 MDN1Q9NU22 5596 aa2.92□□□□□ -1.94
MSH4-201ENST00000263187 MT1MQ8N339 61 aa2.91□□□□□ -1.94
MSH4-201ENST00000263187 KRTAP4-9Q9BYQ8 210 aa2.91□□□□□ -1.94
MSH4-201ENST00000263187 KRTAP19-3Q7Z4W3 81 aa2.89□□□□□ -1.95
MSH4-201ENST00000263187 SPRR2FQ96RM1 72 aa2.89□□□□□ -1.95
MSH4-201ENST00000263187 LCE3BQ5TA77 95 aa2.86□□□□□ -1.95
MSH4-201ENST00000263187 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
MSH4-201ENST00000263187 KRTAP9-9Q9BYP9 154 aa2.84□□□□□ -1.96
MSH4-201ENST00000263187 KRTAP9-4Q9BYQ2 154 aa2.84□□□□□ -1.96
MSH4-201ENST00000263187 KRTAP19-4Q3LI73 84 aa2.81□□□□□ -1.96
MSH4-201ENST00000263187 LCE1AQ5T7P2 110 aa2.8□□□□□ -1.96
MSH4-201ENST00000263187 LCE1DQ5T752 114 aa2.78□□□□□ -1.96
MSH4-201ENST00000263187 KRTAP2-2Q9BYT5 123 aa2.78□□□□□ -1.96
MSH4-201ENST00000263187 LCE5AQ5TCM9 118 aa2.76□□□□□ -1.97
MSH4-201ENST00000263187 SPRR2EP22531 72 aa2.75□□□□□ -1.97
MSH4-201ENST00000263187 SPRR2BP35325 72 aa2.75□□□□□ -1.97
MSH4-201ENST00000263187 SPRR2AP35326 72 aa2.75□□□□□ -1.97
MSH4-201ENST00000263187 KRTAP6-1Q3LI64 71 aa2.71□□□□□ -1.98
MSH4-201ENST00000263187 SPRR2DP22532 72 aa2.66□□□□□ -1.98
MSH4-201ENST00000263187 MUC5BQ9HC84 5762 aaPredicted RBP2.65□□□□□ -1.98
MSH4-201ENST00000263187 LCE3DQ9BYE3 92 aa2.6□□□□□ -1.99
MSH4-201ENST00000263187 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.6□□□□□ -1.99
MSH4-201ENST00000263187 MT1AP04731 61 aa2.57□□□□□ -2
MSH4-201ENST00000263187 KRTAP4-12Q9BQ66 201 aa2.55□□□□□ -2
MSH4-201ENST00000263187 LCE3EQ5T5B0 92 aa2.55□□□□□ -2
MSH4-201ENST00000263187 PRM1P04553 51 aa2.54□□□□□ -2
MSH4-201ENST00000263187 LCE1EQ5T753 118 aa2.53□□□□□ -2
MSH4-201ENST00000263187 GPR98Q8WXG9 6306 aa2.53□□□□□ -2
MSH4-201ENST00000263187 KRTAP5-7Q6L8G8 165 aa2.52□□□□□ -2.01
MSH4-201ENST00000263187 KRTAP4-11Q9BYQ6 195 aa2.51□□□□□ -2.01
MSH4-201ENST00000263187 KRTAP5-5Q701N2 237 aaPredicted RBP2.51□□□□□ -2.01
MSH4-201ENST00000263187 MUC19Q7Z5P9 8384 aa2.47□□□□□ -2.01
MSH4-201ENST00000263187 KRTAP5-10Q6L8G5 202 aa2.46□□□□□ -2.02
MSH4-201ENST00000263187 KRTAP5-4Q6L8H1 288 aa2.46□□□□□ -2.02
MSH4-201ENST00000263187 KRTAP6-2Q3LI66 62 aa2.44□□□□□ -2.02
MSH4-201ENST00000263187 LCE4AQ5TA78 99 aa2.4□□□□□ -2.02
MSH4-201ENST00000263187 LCE1FQ5T754 118 aa2.36□□□□□ -2.03
MSH4-201ENST00000263187 MT3P25713 68 aa2.32□□□□□ -2.04
MSH4-201ENST00000263187 AHNAK2Q8IVF2 5795 aa2.32□□□□□ -2.04
MSH4-201ENST00000263187 MT4P47944 62 aa2.29□□□□□ -2.04
MSH4-201ENST00000263187 KRTAP20-2Q3LI61 65 aa2.26□□□□□ -2.05
MSH4-201ENST00000263187 AHNAKQ09666 5890 aaKnown RBP2.23□□□□□ -2.05
MSH4-201ENST00000263187 KRTAP5-2Q701N4 177 aa2.2□□□□□ -2.06
MSH4-201ENST00000263187 KRTAP5-8O75690 187 aa2.11□□□□□ -2.07
MSH4-201ENST00000263187 MUC5ACP98088 5654 aa2.1□□□□□ -2.07
MSH4-201ENST00000263187 LCE1BQ5T7P3 118 aa2.04□□□□□ -2.08
MSH4-201ENST00000263187 KRTAP5-1Q6L8H4 278 aa1.92□□□□□ -2.1
MSH4-201ENST00000263187 KRTAP4-4Q9BYR3 166 aa1.9□□□□□ -2.11
MSH4-201ENST00000263187 LCE1CQ5T751 118 aa1.78□□□□□ -2.13
MSH4-201ENST00000263187 KRTAP21-2Q3LI59 83 aa1.69□□□□□ -2.14
MSH4-201ENST00000263187 KRTAP5-11Q6L8G4 156 aa1.59□□□□□ -2.16
MSH4-201ENST00000263187 KRTAP21-1Q3LI58 79 aa1.48□□□□□ -2.17
MSH4-201ENST00000263187 PHGR1C9JFL3 82 aa1.37□□□□□ -2.19
MSH4-201ENST00000263187 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 12.8 ms