RNA–Protein interactions for RNA: ENST00000261726.10

CUX2-201, Transcript of cut like homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUX2, Length 6,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-201ENST00000261726 LCE1DQ5T752 114 aa4.56□□□□□ -1.68
CUX2-201ENST00000261726 FAT4Q6V0I7 4981 aa4.54□□□□□ -1.68
CUX2-201ENST00000261726 PRM1P04553 51 aa4.52□□□□□ -1.69
CUX2-201ENST00000261726 MT1LQ93083 61 aa4.5□□□□□ -1.69
CUX2-201ENST00000261726 FSIP2Q5CZC0 6907 aa4.49□□□□□ -1.69
CUX2-201ENST00000261726 LCE2AQ5TA79 106 aaPredicted RBP4.49□□□□□ -1.69
CUX2-201ENST00000261726 UBR4Q5T4S7 5183 aa4.48□□□□□ -1.69
CUX2-201ENST00000261726 KRTAP9-6A0A140TA67 174 aa4.45□□□□□ -1.7
CUX2-201ENST00000261726 RNF213Q63HN8 5207 aa4.45□□□□□ -1.7
CUX2-201ENST00000261726 MT1EP04732 61 aa4.44□□□□□ -1.7
CUX2-201ENST00000261726 MT3P25713 68 aa4.44□□□□□ -1.7
CUX2-201ENST00000261726 LCE5AQ5TCM9 118 aa4.44□□□□□ -1.7
CUX2-201ENST00000261726 LOC100996750A0A140TA64 210 aa4.42□□□□□ -1.7
CUX2-201ENST00000261726 MT1MQ8N339 61 aa4.35□□□□□ -1.71
CUX2-201ENST00000261726 KRTAP4-3Q9BYR4 195 aa4.33□□□□□ -1.72
CUX2-201ENST00000261726 LCE1CQ5T751 118 aa4.29□□□□□ -1.72
CUX2-201ENST00000261726 LCE1EQ5T753 118 aa4.29□□□□□ -1.72
CUX2-201ENST00000261726 LCE1FQ5T754 118 aa4.29□□□□□ -1.72
CUX2-201ENST00000261726 LCE1AQ5T7P2 110 aa4.29□□□□□ -1.72
CUX2-201ENST00000261726 KRTAP19-6Q3LI70 58 aa4.26□□□□□ -1.73
CUX2-201ENST00000261726 KRTAP20-1Q3LI63 56 aa4.23□□□□□ -1.73
CUX2-201ENST00000261726 KRTAP4-9Q9BYQ8 210 aa4.17□□□□□ -1.74
CUX2-201ENST00000261726 KRTAP9-7A8MTY7 169 aa4.11□□□□□ -1.75
CUX2-201ENST00000261726 KRTAP19-7Q3SYF9 63 aa4.04□□□□□ -1.76
CUX2-201ENST00000261726 MT1AP04731 61 aa4.04□□□□□ -1.76
CUX2-201ENST00000261726 SYNE2Q8WXH0 6885 aaKnown RBP4.04□□□□□ -1.76
CUX2-201ENST00000261726 KRTAP2-3P0C7H8 128 aa4.02□□□□□ -1.77
CUX2-201ENST00000261726 KRTAP2-4Q9BYR9 128 aa4.02□□□□□ -1.77
CUX2-201ENST00000261726 KRTAP2-1Q9BYU5 128 aa4.02□□□□□ -1.77
CUX2-201ENST00000261726 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.97□□□□□ -1.77
CUX2-201ENST00000261726 LCE4AQ5TA78 99 aa3.93□□□□□ -1.78
CUX2-201ENST00000261726 SYNE1Q8NF91 8797 aaKnown RBP3.89□□□□□ -1.79
CUX2-201ENST00000261726 KRTAP6-2Q3LI66 62 aa3.89□□□□□ -1.79
CUX2-201ENST00000261726 KMT2DO14686 5537 aa3.89□□□□□ -1.79
CUX2-201ENST00000261726 KRTAP6-1Q3LI64 71 aa3.83□□□□□ -1.8
CUX2-201ENST00000261726 USH2AO75445 5202 aa3.81□□□□□ -1.8
CUX2-201ENST00000261726 KRTAP6-3Q3LI67 103 aa3.78□□□□□ -1.8
CUX2-201ENST00000261726 KRTAP9-4Q9BYQ2 154 aa3.76□□□□□ -1.81
CUX2-201ENST00000261726 KRTAP9-6A8MVA2 160 aa3.75□□□□□ -1.81
CUX2-201ENST00000261726 SSPOA2VEC9 5147 aa3.65□□□□□ -1.83
CUX2-201ENST00000261726 MACF1Q9UPN3 7388 aaKnown RBP3.62□□□□□ -1.83
CUX2-201ENST00000261726 KRTAP9-9Q9BYP9 154 aa3.61□□□□□ -1.83
CUX2-201ENST00000261726 KRTAP2-2Q9BYT5 123 aa3.58□□□□□ -1.84
CUX2-201ENST00000261726 OBSCNQ5VST9 7968 aa3.54□□□□□ -1.84
CUX2-201ENST00000261726 KRTAP20-2Q3LI61 65 aa3.5□□□□□ -1.85
CUX2-201ENST00000261726 FCGBPQ9Y6R7 5405 aaPredicted RBP3.5□□□□□ -1.85
CUX2-201ENST00000261726 KRTAP5-9P26371 169 aa3.45□□□□□ -1.86
CUX2-201ENST00000261726 KRTAP4-6Q9BYQ5 205 aa3.43□□□□□ -1.86
CUX2-201ENST00000261726 DSTQ03001 7570 aaKnown RBP3.39□□□□□ -1.87
CUX2-201ENST00000261726 NEBP20929 6669 aa3.38□□□□□ -1.87
CUX2-201ENST00000261726 MUC12Q9UKN1 5478 aa3.38□□□□□ -1.87
CUX2-201ENST00000261726 KRTAP4-12Q9BQ66 201 aa3.35□□□□□ -1.87
CUX2-201ENST00000261726 KRTAP4-2Q9BYR5 136 aa3.35□□□□□ -1.87
CUX2-201ENST00000261726 KRTAP4-11Q9BYQ6 195 aa3.34□□□□□ -1.87
CUX2-201ENST00000261726 KRTAP4-4Q9BYR3 166 aa3.32□□□□□ -1.88
CUX2-201ENST00000261726 MDN1Q9NU22 5596 aa3.11□□□□□ -1.91
CUX2-201ENST00000261726 MUC19Q7Z5P9 8384 aa3.11□□□□□ -1.91
CUX2-201ENST00000261726 KRTAP5-5Q701N2 237 aaPredicted RBP3.05□□□□□ -1.92
CUX2-201ENST00000261726 GPR98Q8WXG9 6306 aa2.91□□□□□ -1.94
CUX2-201ENST00000261726 KRTAP5-4Q6L8H1 288 aa2.87□□□□□ -1.95
CUX2-201ENST00000261726 KRTAP5-3Q6L8H2 238 aa2.63□□□□□ -1.99
CUX2-201ENST00000261726 PHGR1C9JFL3 82 aa2.54□□□□□ -2
CUX2-201ENST00000261726 KRTAP5-2Q701N4 177 aa2.53□□□□□ -2
CUX2-201ENST00000261726 HMCN1Q96RW7 5635 aa2.46□□□□□ -2.02
CUX2-201ENST00000261726 MUC5ACP98088 5654 aa2.41□□□□□ -2.02
CUX2-201ENST00000261726 KRTAP5-8O75690 187 aa2.37□□□□□ -2.03
CUX2-201ENST00000261726 AHNAK2Q8IVF2 5795 aa2.33□□□□□ -2.04
CUX2-201ENST00000261726 KRTAP5-1Q6L8H4 278 aa2.23□□□□□ -2.05
CUX2-201ENST00000261726 KRTAP5-10Q6L8G5 202 aa2.21□□□□□ -2.06
CUX2-201ENST00000261726 KRTAP5-7Q6L8G8 165 aa2.11□□□□□ -2.07
CUX2-201ENST00000261726 AHNAKQ09666 5890 aaKnown RBP2.09□□□□□ -2.08
CUX2-201ENST00000261726 KRTAP21-2Q3LI59 83 aa2.03□□□□□ -2.08
CUX2-201ENST00000261726 KRTAP5-11Q6L8G4 156 aa2□□□□□ -2.09
CUX2-201ENST00000261726 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.94□□□□□ -2.1
CUX2-201ENST00000261726 MUC5BQ9HC84 5762 aaPredicted RBP1.93□□□□□ -2.1
CUX2-201ENST00000261726 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
CUX2-201ENST00000261726 MUC16Q8WXI7 14507 aa1.3□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 10.8 ms