RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 LCE1BQ5T7P3 118 aa2.6□□□□□ -1.99
PTCD3-201ENST00000254630 LCE1DQ5T752 114 aa2.59□□□□□ -2
PTCD3-201ENST00000254630 LRP2P98164 4655 aa2.57□□□□□ -2
PTCD3-201ENST00000254630 KRTAP20-1Q3LI63 56 aa2.57□□□□□ -2
PTCD3-201ENST00000254630 LCE2AQ5TA79 106 aaPredicted RBP2.55□□□□□ -2
PTCD3-201ENST00000254630 MT1AP04731 61 aa2.54□□□□□ -2
PTCD3-201ENST00000254630 KMT2CQ8NEZ4 4911 aaKnown RBP2.52□□□□□ -2.01
PTCD3-201ENST00000254630 KRTAP19-7Q3SYF9 63 aa2.5□□□□□ -2.01
PTCD3-201ENST00000254630 KIAA1109Q2LD37 5005 aa2.49□□□□□ -2.01
PTCD3-201ENST00000254630 LCE5AQ5TCM9 118 aa2.47□□□□□ -2.01
PTCD3-201ENST00000254630 KRTAP2-3P0C7H8 128 aa2.46□□□□□ -2.02
PTCD3-201ENST00000254630 KRTAP2-4Q9BYR9 128 aa2.46□□□□□ -2.02
PTCD3-201ENST00000254630 KRTAP2-1Q9BYU5 128 aa2.46□□□□□ -2.02
PTCD3-201ENST00000254630 KRTAP4-9Q9BYQ8 210 aa2.46□□□□□ -2.02
PTCD3-201ENST00000254630 KRTAP6-3Q3LI67 103 aa2.45□□□□□ -2.02
PTCD3-201ENST00000254630 KRTAP9-7A8MTY7 169 aa2.44□□□□□ -2.02
PTCD3-201ENST00000254630 PCLOQ9Y6V0 5065 aa2.42□□□□□ -2.02
PTCD3-201ENST00000254630 KRTAP9-4Q9BYQ2 154 aa2.4□□□□□ -2.03
PTCD3-201ENST00000254630 LCE1AQ5T7P2 110 aa2.39□□□□□ -2.03
PTCD3-201ENST00000254630 LCE4AQ5TA78 99 aa2.39□□□□□ -2.03
PTCD3-201ENST00000254630 KRTAP6-1Q3LI64 71 aa2.38□□□□□ -2.03
PTCD3-201ENST00000254630 KRTAP6-2Q3LI66 62 aa2.38□□□□□ -2.03
PTCD3-201ENST00000254630 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.36□□□□□ -2.03
PTCD3-201ENST00000254630 HMCN2Q8NDA2 5059 aa2.31□□□□□ -2.04
PTCD3-201ENST00000254630 KRTAP2-2Q9BYT5 123 aa2.31□□□□□ -2.04
PTCD3-201ENST00000254630 EPPK1P58107 5090 aaKnown RBP2.3□□□□□ -2.04
PTCD3-201ENST00000254630 FAT4Q6V0I7 4981 aa2.26□□□□□ -2.05
PTCD3-201ENST00000254630 KRTAP9-6A8MVA2 160 aa2.26□□□□□ -2.05
PTCD3-201ENST00000254630 LCE1CQ5T751 118 aa2.26□□□□□ -2.05
PTCD3-201ENST00000254630 LCE1EQ5T753 118 aa2.26□□□□□ -2.05
PTCD3-201ENST00000254630 LCE1FQ5T754 118 aa2.26□□□□□ -2.05
PTCD3-201ENST00000254630 ABCA13Q86UQ4 5058 aa2.22□□□□□ -2.05
PTCD3-201ENST00000254630 RNF213Q63HN8 5207 aa2.18□□□□□ -2.06
PTCD3-201ENST00000254630 SYNE2Q8WXH0 6885 aaKnown RBP2.17□□□□□ -2.06
PTCD3-201ENST00000254630 OBSCNQ5VST9 7968 aa2.13□□□□□ -2.07
PTCD3-201ENST00000254630 KRTAP9-9Q9BYP9 154 aa2.11□□□□□ -2.07
PTCD3-201ENST00000254630 GPR98Q8WXG9 6306 aa2.08□□□□□ -2.08
PTCD3-201ENST00000254630 SYNE1Q8NF91 8797 aaKnown RBP2.08□□□□□ -2.08
PTCD3-201ENST00000254630 KRTAP5-9P26371 169 aa2.01□□□□□ -2.09
PTCD3-201ENST00000254630 FSIP2Q5CZC0 6907 aa2□□□□□ -2.09
PTCD3-201ENST00000254630 UBR4Q5T4S7 5183 aa1.97□□□□□ -2.09
PTCD3-201ENST00000254630 KRTAP4-6Q9BYQ5 205 aa1.97□□□□□ -2.09
PTCD3-201ENST00000254630 KRTAP20-2Q3LI61 65 aa1.96□□□□□ -2.1
PTCD3-201ENST00000254630 KRTAP4-11Q9BYQ6 195 aa1.93□□□□□ -2.1
PTCD3-201ENST00000254630 KRTAP5-4Q6L8H1 288 aa1.89□□□□□ -2.11
PTCD3-201ENST00000254630 MUC2Q02817 5179 aa1.88□□□□□ -2.11
PTCD3-201ENST00000254630 NEBP20929 6669 aa1.87□□□□□ -2.11
PTCD3-201ENST00000254630 DSTQ03001 7570 aaKnown RBP1.81□□□□□ -2.12
PTCD3-201ENST00000254630 KRTAP4-4Q9BYR3 166 aa1.8□□□□□ -2.12
PTCD3-201ENST00000254630 SSPOA2VEC9 5147 aa1.79□□□□□ -2.12
PTCD3-201ENST00000254630 KRTAP4-12Q9BQ66 201 aa1.79□□□□□ -2.12
PTCD3-201ENST00000254630 KRTAP4-2Q9BYR5 136 aa1.79□□□□□ -2.12
PTCD3-201ENST00000254630 MUC12Q9UKN1 5478 aa1.75□□□□□ -2.13
PTCD3-201ENST00000254630 MACF1Q9UPN3 7388 aaKnown RBP1.73□□□□□ -2.13
PTCD3-201ENST00000254630 KMT2DO14686 5537 aa1.72□□□□□ -2.13
PTCD3-201ENST00000254630 KRTAP5-5Q701N2 237 aaPredicted RBP1.71□□□□□ -2.14
PTCD3-201ENST00000254630 USH2AO75445 5202 aa1.71□□□□□ -2.14
PTCD3-201ENST00000254630 MUC19Q7Z5P9 8384 aa1.67□□□□□ -2.14
PTCD3-201ENST00000254630 KRTAP5-3Q6L8H2 238 aa1.6□□□□□ -2.15
PTCD3-201ENST00000254630 FCGBPQ9Y6R7 5405 aaPredicted RBP1.55□□□□□ -2.16
PTCD3-201ENST00000254630 MDN1Q9NU22 5596 aa1.55□□□□□ -2.16
PTCD3-201ENST00000254630 AHNAKQ09666 5890 aaKnown RBP1.47□□□□□ -2.17
PTCD3-201ENST00000254630 AHNAK2Q8IVF2 5795 aa1.46□□□□□ -2.18
PTCD3-201ENST00000254630 KRTAP5-8O75690 187 aa1.43□□□□□ -2.18
PTCD3-201ENST00000254630 KRTAP5-2Q701N4 177 aa1.38□□□□□ -2.19
PTCD3-201ENST00000254630 PHGR1C9JFL3 82 aa1.37□□□□□ -2.19
PTCD3-201ENST00000254630 HMCN1Q96RW7 5635 aa1.37□□□□□ -2.19
PTCD3-201ENST00000254630 KRTAP5-10Q6L8G5 202 aa1.36□□□□□ -2.19
PTCD3-201ENST00000254630 MUC5ACP98088 5654 aa1.35□□□□□ -2.19
PTCD3-201ENST00000254630 MUC5BQ9HC84 5762 aaPredicted RBP1.3□□□□□ -2.2
PTCD3-201ENST00000254630 KRTAP5-1Q6L8H4 278 aa1.25□□□□□ -2.21
PTCD3-201ENST00000254630 KRTAP5-11Q6L8G4 156 aa1.24□□□□□ -2.21
PTCD3-201ENST00000254630 KRTAP21-2Q3LI59 83 aa1.16□□□□□ -2.22
PTCD3-201ENST00000254630 KRTAP5-7Q6L8G8 165 aa1.11□□□□□ -2.23
PTCD3-201ENST00000254630 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.08□□□□□ -2.24
PTCD3-201ENST00000254630 KRTAP21-1Q3LI58 79 aa1.07□□□□□ -2.24
PTCD3-201ENST00000254630 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 88.9 ms