RNA–Protein interactions for RNA: ENST00000248139.7

RAB40C-201, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB40C, Length 2,699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-201ENST00000248139 KRTAP2-4Q9BYR9 128 aa8.58□□□□□ -1.04
RAB40C-201ENST00000248139 KRTAP2-1Q9BYU5 128 aa8.58□□□□□ -1.04
RAB40C-201ENST00000248139 LOC100996750A0A140TA64 210 aa8.55□□□□□ -1.04
RAB40C-201ENST00000248139 LCE2DQ5TA82 110 aaPredicted RBP8.49□□□□□ -1.05
RAB40C-201ENST00000248139 DSTQ03001 7570 aaKnown RBP8.48□□□□□ -1.05
RAB40C-201ENST00000248139 MT1GP13640 62 aa8.4□□□□□ -1.06
RAB40C-201ENST00000248139 KRTAP19-4Q3LI73 84 aa8.39□□□□□ -1.07
RAB40C-201ENST00000248139 CRCT1Q9UGL9 99 aa8.35□□□□□ -1.07
RAB40C-201ENST00000248139 MT1MQ8N339 61 aa8.28□□□□□ -1.08
RAB40C-201ENST00000248139 KRTAP19-3Q7Z4W3 81 aa8.26□□□□□ -1.09
RAB40C-201ENST00000248139 MACF1Q9UPN3 7388 aaKnown RBP8.2□□□□□ -1.1
RAB40C-201ENST00000248139 SPRR2FQ96RM1 72 aa8.11□□□□□ -1.11
RAB40C-201ENST00000248139 SYNE2Q8WXH0 6885 aaKnown RBP8□□□□□ -1.13
RAB40C-201ENST00000248139 LCE5AQ5TCM9 118 aa7.98□□□□□ -1.13
RAB40C-201ENST00000248139 MDN1Q9NU22 5596 aa7.96□□□□□ -1.13
RAB40C-201ENST00000248139 SYNE1Q8NF91 8797 aaKnown RBP7.86□□□□□ -1.15
RAB40C-201ENST00000248139 LCE3BQ5TA77 95 aa7.77□□□□□ -1.17
RAB40C-201ENST00000248139 KRTAP12-4P60329 112 aa7.72□□□□□ -1.17
RAB40C-201ENST00000248139 KRTAP4-9Q9BYQ8 210 aa7.71□□□□□ -1.18
RAB40C-201ENST00000248139 KRTAP6-1Q3LI64 71 aa7.59□□□□□ -1.19
RAB40C-201ENST00000248139 LCE1AQ5T7P2 110 aa7.49□□□□□ -1.21
RAB40C-201ENST00000248139 KRTAP9-2Q9BYQ4 174 aa7.49□□□□□ -1.21
RAB40C-201ENST00000248139 MT1AP04731 61 aa7.35□□□□□ -1.23
RAB40C-201ENST00000248139 SPRR2EP22531 72 aa7.34□□□□□ -1.23
RAB40C-201ENST00000248139 SPRR2BP35325 72 aa7.34□□□□□ -1.23
RAB40C-201ENST00000248139 SPRR2AP35326 72 aa7.34□□□□□ -1.23
RAB40C-201ENST00000248139 KRTAP5-9P26371 169 aa7.33□□□□□ -1.24
RAB40C-201ENST00000248139 OBSCNQ5VST9 7968 aa7.3□□□□□ -1.24
RAB40C-201ENST00000248139 KRTAP5-5Q701N2 237 aaPredicted RBP7.26□□□□□ -1.25
RAB40C-201ENST00000248139 LCE3DQ9BYE3 92 aa7.18□□□□□ -1.26
RAB40C-201ENST00000248139 LCE3EQ5T5B0 92 aa7.05□□□□□ -1.28
RAB40C-201ENST00000248139 KRTAP9-7A8MTY7 169 aa7.01□□□□□ -1.29
RAB40C-201ENST00000248139 SPRR2DP22532 72 aa6.99□□□□□ -1.29
RAB40C-201ENST00000248139 KRTAP9-4Q9BYQ2 154 aa6.95□□□□□ -1.3
RAB40C-201ENST00000248139 PRM1P04553 51 aa6.83□□□□□ -1.32
RAB40C-201ENST00000248139 KRTAP6-2Q3LI66 62 aa6.82□□□□□ -1.32
RAB40C-201ENST00000248139 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.75□□□□□ -1.33
RAB40C-201ENST00000248139 KRTAP6-3Q3LI67 103 aa6.69□□□□□ -1.34
RAB40C-201ENST00000248139 MT3P25713 68 aa6.61□□□□□ -1.35
RAB40C-201ENST00000248139 KRTAP9-6A0A140TA67 174 aa6.43□□□□□ -1.38
RAB40C-201ENST00000248139 NEBP20929 6669 aa6.39□□□□□ -1.39
RAB40C-201ENST00000248139 KRTAP4-6Q9BYQ5 205 aa6.36□□□□□ -1.39
RAB40C-201ENST00000248139 KRTAP5-4Q6L8H1 288 aa6.34□□□□□ -1.39
RAB40C-201ENST00000248139 MT4P47944 62 aa6.32□□□□□ -1.4
RAB40C-201ENST00000248139 HMCN1Q96RW7 5635 aa6.09□□□□□ -1.43
RAB40C-201ENST00000248139 KRTAP20-2Q3LI61 65 aa6.05□□□□□ -1.44
RAB40C-201ENST00000248139 KRTAP5-2Q701N4 177 aa5.92□□□□□ -1.46
RAB40C-201ENST00000248139 KRTAP2-2Q9BYT5 123 aa5.92□□□□□ -1.46
RAB40C-201ENST00000248139 LCE4AQ5TA78 99 aa5.89□□□□□ -1.47
RAB40C-201ENST00000248139 LCE1DQ5T752 114 aa5.85□□□□□ -1.47
RAB40C-201ENST00000248139 MUC5ACP98088 5654 aa5.8□□□□□ -1.48
RAB40C-201ENST00000248139 KRTAP5-3Q6L8H2 238 aa5.72□□□□□ -1.49
RAB40C-201ENST00000248139 KRTAP20-1Q3LI63 56 aa5.61□□□□□ -1.51
RAB40C-201ENST00000248139 LCE1BQ5T7P3 118 aa5.54□□□□□ -1.52
RAB40C-201ENST00000248139 LCE1EQ5T753 118 aa5.3□□□□□ -1.56
RAB40C-201ENST00000248139 KRTAP5-10Q6L8G5 202 aa5.25□□□□□ -1.57
RAB40C-201ENST00000248139 KRTAP4-11Q9BYQ6 195 aa5.24□□□□□ -1.57
RAB40C-201ENST00000248139 KRTAP4-2Q9BYR5 136 aa5.19□□□□□ -1.58
RAB40C-201ENST00000248139 KRTAP5-1Q6L8H4 278 aa5.12□□□□□ -1.59
RAB40C-201ENST00000248139 LCE1CQ5T751 118 aa5.06□□□□□ -1.6
RAB40C-201ENST00000248139 KRTAP21-2Q3LI59 83 aa4.85□□□□□ -1.63
RAB40C-201ENST00000248139 AHNAK2Q8IVF2 5795 aa4.81□□□□□ -1.64
RAB40C-201ENST00000248139 KRTAP5-8O75690 187 aa4.78□□□□□ -1.64
RAB40C-201ENST00000248139 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.71□□□□□ -1.66
RAB40C-201ENST00000248139 KRTAP4-4Q9BYR3 166 aa4.66□□□□□ -1.66
RAB40C-201ENST00000248139 MUC5BQ9HC84 5762 aaPredicted RBP4.62□□□□□ -1.67
RAB40C-201ENST00000248139 MUC19Q7Z5P9 8384 aa4.58□□□□□ -1.68
RAB40C-201ENST00000248139 KRTAP5-7Q6L8G8 165 aa4.54□□□□□ -1.68
RAB40C-201ENST00000248139 KRTAP4-12Q9BQ66 201 aa4.41□□□□□ -1.7
RAB40C-201ENST00000248139 KRTAP5-11Q6L8G4 156 aa4.33□□□□□ -1.72
RAB40C-201ENST00000248139 KRTAP21-1Q3LI58 79 aa4.17□□□□□ -1.74
RAB40C-201ENST00000248139 GPR98Q8WXG9 6306 aa4.08□□□□□ -1.76
RAB40C-201ENST00000248139 KRTAP9-9Q9BYP9 154 aa3.99□□□□□ -1.77
RAB40C-201ENST00000248139 PHGR1C9JFL3 82 aa3.79□□□□□ -1.8
RAB40C-201ENST00000248139 LCE1FQ5T754 118 aa3.76□□□□□ -1.81
RAB40C-201ENST00000248139 AHNAKQ09666 5890 aaKnown RBP3.46□□□□□ -1.86
RAB40C-201ENST00000248139 MUC16Q8WXI7 14507 aa2.52□□□□□ -2.01
Retrieved 77 of 20,778 RNA–protein pairs in 100.7 ms