RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 SPRR2EP22531 72 aa3.38□□□□□ -1.87
VPS4B-201ENST00000238497 SPRR2BP35325 72 aa3.38□□□□□ -1.87
VPS4B-201ENST00000238497 SPRR2AP35326 72 aa3.38□□□□□ -1.87
VPS4B-201ENST00000238497 KRTAP4-8Q9BYQ9 185 aa3.38□□□□□ -1.87
VPS4B-201ENST00000238497 KRTAP20-1Q3LI63 56 aa3.37□□□□□ -1.87
VPS4B-201ENST00000238497 KRTAP12-3P60328 96 aa3.34□□□□□ -1.88
VPS4B-201ENST00000238497 HMCN1Q96RW7 5635 aa3.3□□□□□ -1.88
VPS4B-201ENST00000238497 KRTAP2-3P0C7H8 128 aa3.26□□□□□ -1.89
VPS4B-201ENST00000238497 SPRR2DP22532 72 aa3.26□□□□□ -1.89
VPS4B-201ENST00000238497 LCE1AQ5T7P2 110 aa3.26□□□□□ -1.89
VPS4B-201ENST00000238497 KRTAP2-4Q9BYR9 128 aa3.26□□□□□ -1.89
VPS4B-201ENST00000238497 KRTAP19-5Q3LI72 72 aa3.25□□□□□ -1.89
VPS4B-201ENST00000238497 LOC100996750A0A140TA64 210 aa3.23□□□□□ -1.89
VPS4B-201ENST00000238497 KRTAP4-6Q9BYQ5 205 aa3.23□□□□□ -1.89
VPS4B-201ENST00000238497 DSTQ03001 7570 aaKnown RBP3.18□□□□□ -1.9
VPS4B-201ENST00000238497 KRTAP2-2Q9BYT5 123 aa3.16□□□□□ -1.9
VPS4B-201ENST00000238497 KRTAP2-1Q9BYU5 128 aa3.16□□□□□ -1.9
VPS4B-201ENST00000238497 KRTAP4-7Q9BYR0 210 aa3.15□□□□□ -1.91
VPS4B-201ENST00000238497 LCE3BQ5TA77 95 aa3.14□□□□□ -1.91
VPS4B-201ENST00000238497 SPRR5A0A1B0GTR4 108 aa3.1□□□□□ -1.91
VPS4B-201ENST00000238497 INE1O15225 51 aa3.1□□□□□ -1.91
VPS4B-201ENST00000238497 KRTAP19-7Q3SYF9 63 aa3.09□□□□□ -1.92
VPS4B-201ENST00000238497 MT1EP04732 61 aa3.07□□□□□ -1.92
VPS4B-201ENST00000238497 LCE3CQ5T5A8 94 aa3.07□□□□□ -1.92
VPS4B-201ENST00000238497 KRTAP19-3Q7Z4W3 81 aa3.05□□□□□ -1.92
VPS4B-201ENST00000238497 LCE5AQ5TCM9 118 aa3.02□□□□□ -1.93
VPS4B-201ENST00000238497 OBSCNQ5VST9 7968 aa2.99□□□□□ -1.93
VPS4B-201ENST00000238497 KRTAP4-3Q9BYR4 195 aa2.99□□□□□ -1.93
VPS4B-201ENST00000238497 MT1GP13640 62 aa2.98□□□□□ -1.93
VPS4B-201ENST00000238497 SYNE1Q8NF91 8797 aaKnown RBP2.98□□□□□ -1.93
VPS4B-201ENST00000238497 KRTAP4-9Q9BYQ8 210 aa2.98□□□□□ -1.93
VPS4B-201ENST00000238497 KRTAP9-6A8MVA2 160 aa2.96□□□□□ -1.94
VPS4B-201ENST00000238497 MT1LQ93083 61 aa2.95□□□□□ -1.94
VPS4B-201ENST00000238497 MT1MQ8N339 61 aa2.93□□□□□ -1.94
VPS4B-201ENST00000238497 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
VPS4B-201ENST00000238497 LCE4AQ5TA78 99 aa2.92□□□□□ -1.94
VPS4B-201ENST00000238497 MT4P47944 62 aa2.9□□□□□ -1.95
VPS4B-201ENST00000238497 KRTAP9-4Q9BYQ2 154 aa2.89□□□□□ -1.95
VPS4B-201ENST00000238497 LCE1DQ5T752 114 aa2.85□□□□□ -1.95
VPS4B-201ENST00000238497 KRTAP5-3Q6L8H2 238 aa2.83□□□□□ -1.96
VPS4B-201ENST00000238497 KRTAP9-9Q9BYP9 154 aa2.83□□□□□ -1.96
VPS4B-201ENST00000238497 KRTAP4-12Q9BQ66 201 aa2.81□□□□□ -1.96
VPS4B-201ENST00000238497 AHNAK2Q8IVF2 5795 aa2.71□□□□□ -1.98
VPS4B-201ENST00000238497 KRTAP19-4Q3LI73 84 aa2.7□□□□□ -1.98
VPS4B-201ENST00000238497 KRTAP5-4Q6L8H1 288 aa2.7□□□□□ -1.98
VPS4B-201ENST00000238497 KRTAP12-4P60329 112 aa2.67□□□□□ -1.98
VPS4B-201ENST00000238497 LCE1FQ5T754 118 aa2.65□□□□□ -1.99
VPS4B-201ENST00000238497 MUC5BQ9HC84 5762 aaPredicted RBP2.65□□□□□ -1.99
VPS4B-201ENST00000238497 KRTAP20-2Q3LI61 65 aa2.61□□□□□ -1.99
VPS4B-201ENST00000238497 KRTAP5-5Q701N2 237 aaPredicted RBP2.6□□□□□ -1.99
VPS4B-201ENST00000238497 KRTAP6-1Q3LI64 71 aa2.57□□□□□ -2
VPS4B-201ENST00000238497 KRTAP5-10Q6L8G5 202 aa2.56□□□□□ -2
VPS4B-201ENST00000238497 MT1AP04731 61 aa2.5□□□□□ -2.01
VPS4B-201ENST00000238497 KRTAP4-2Q9BYR5 136 aa2.45□□□□□ -2.02
VPS4B-201ENST00000238497 KRTAP5-7Q6L8G8 165 aa2.44□□□□□ -2.02
VPS4B-201ENST00000238497 KRTAP4-11Q9BYQ6 195 aa2.44□□□□□ -2.02
VPS4B-201ENST00000238497 LCE3DQ9BYE3 92 aa2.42□□□□□ -2.02
VPS4B-201ENST00000238497 KRTAP6-2Q3LI66 62 aa2.41□□□□□ -2.02
VPS4B-201ENST00000238497 LCE3EQ5T5B0 92 aa2.39□□□□□ -2.03
VPS4B-201ENST00000238497 KRTAP5-2Q701N4 177 aa2.35□□□□□ -2.03
VPS4B-201ENST00000238497 LCE1EQ5T753 118 aa2.34□□□□□ -2.03
VPS4B-201ENST00000238497 MT3P25713 68 aa2.32□□□□□ -2.04
VPS4B-201ENST00000238497 KRTAP5-8O75690 187 aa2.29□□□□□ -2.04
VPS4B-201ENST00000238497 AHNAKQ09666 5890 aaKnown RBP2.25□□□□□ -2.05
VPS4B-201ENST00000238497 PRM1P04553 51 aa2.24□□□□□ -2.05
VPS4B-201ENST00000238497 MUC5ACP98088 5654 aa2.22□□□□□ -2.05
VPS4B-201ENST00000238497 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.14□□□□□ -2.07
VPS4B-201ENST00000238497 KRTAP5-1Q6L8H4 278 aa2.14□□□□□ -2.07
VPS4B-201ENST00000238497 MUC19Q7Z5P9 8384 aa2.11□□□□□ -2.07
VPS4B-201ENST00000238497 LCE1BQ5T7P3 118 aa2.09□□□□□ -2.07
VPS4B-201ENST00000238497 LCE1CQ5T751 118 aa1.9□□□□□ -2.11
VPS4B-201ENST00000238497 KRTAP4-4Q9BYR3 166 aa1.72□□□□□ -2.13
VPS4B-201ENST00000238497 KRTAP5-11Q6L8G4 156 aa1.71□□□□□ -2.14
VPS4B-201ENST00000238497 KRTAP21-2Q3LI59 83 aa1.61□□□□□ -2.15
VPS4B-201ENST00000238497 PHGR1C9JFL3 82 aa1.58□□□□□ -2.16
VPS4B-201ENST00000238497 KRTAP21-1Q3LI58 79 aa1.27□□□□□ -2.21
VPS4B-201ENST00000238497 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 258.4 ms