RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 FSIP2Q5CZC0 6907 aa6.1□□□□□ -1.43
CPSF3-201ENST00000238112 KRTAP4-3Q9BYR4 195 aa6.1□□□□□ -1.43
CPSF3-201ENST00000238112 LOC100996750A0A140TA64 210 aa6.08□□□□□ -1.44
CPSF3-201ENST00000238112 MT1GP13640 62 aa6.05□□□□□ -1.44
CPSF3-201ENST00000238112 KRTAP19-3Q7Z4W3 81 aa6.05□□□□□ -1.44
CPSF3-201ENST00000238112 MT1MQ8N339 61 aa6.04□□□□□ -1.44
CPSF3-201ENST00000238112 FCGBPQ9Y6R7 5405 aaPredicted RBP6.01□□□□□ -1.45
CPSF3-201ENST00000238112 MUC12Q9UKN1 5478 aa5.94□□□□□ -1.46
CPSF3-201ENST00000238112 CRCT1Q9UGL9 99 aa5.93□□□□□ -1.46
CPSF3-201ENST00000238112 LCE5AQ5TCM9 118 aa5.82□□□□□ -1.48
CPSF3-201ENST00000238112 SPRR2FQ96RM1 72 aa5.82□□□□□ -1.48
CPSF3-201ENST00000238112 KRTAP12-4P60329 112 aa5.69□□□□□ -1.5
CPSF3-201ENST00000238112 DSTQ03001 7570 aaKnown RBP5.65□□□□□ -1.5
CPSF3-201ENST00000238112 LCE3BQ5TA77 95 aa5.62□□□□□ -1.51
CPSF3-201ENST00000238112 KRTAP9-2Q9BYQ4 174 aa5.6□□□□□ -1.51
CPSF3-201ENST00000238112 KRTAP9-6A0A140TA67 174 aa5.56□□□□□ -1.52
CPSF3-201ENST00000238112 MACF1Q9UPN3 7388 aaKnown RBP5.56□□□□□ -1.52
CPSF3-201ENST00000238112 KRTAP6-1Q3LI64 71 aa5.48□□□□□ -1.53
CPSF3-201ENST00000238112 MT1AP04731 61 aa5.47□□□□□ -1.53
CPSF3-201ENST00000238112 KRTAP4-9Q9BYQ8 210 aa5.47□□□□□ -1.53
CPSF3-201ENST00000238112 LCE1AQ5T7P2 110 aa5.4□□□□□ -1.55
CPSF3-201ENST00000238112 MDN1Q9NU22 5596 aa5.37□□□□□ -1.55
CPSF3-201ENST00000238112 KRTAP5-9P26371 169 aa5.35□□□□□ -1.55
CPSF3-201ENST00000238112 SYNE2Q8WXH0 6885 aaKnown RBP5.35□□□□□ -1.55
CPSF3-201ENST00000238112 KRTAP5-5Q701N2 237 aaPredicted RBP5.32□□□□□ -1.56
CPSF3-201ENST00000238112 LCE3DQ9BYE3 92 aa5.32□□□□□ -1.56
CPSF3-201ENST00000238112 SYNE1Q8NF91 8797 aaKnown RBP5.29□□□□□ -1.56
CPSF3-201ENST00000238112 SPRR2EP22531 72 aa5.28□□□□□ -1.56
CPSF3-201ENST00000238112 SPRR2BP35325 72 aa5.28□□□□□ -1.56
CPSF3-201ENST00000238112 SPRR2AP35326 72 aa5.28□□□□□ -1.56
CPSF3-201ENST00000238112 LCE3EQ5T5B0 92 aa5.25□□□□□ -1.57
CPSF3-201ENST00000238112 KRTAP9-4Q9BYQ2 154 aa5.12□□□□□ -1.59
CPSF3-201ENST00000238112 KRTAP9-7A8MTY7 169 aa5.07□□□□□ -1.6
CPSF3-201ENST00000238112 SPRR2DP22532 72 aa5.06□□□□□ -1.6
CPSF3-201ENST00000238112 PRM1P04553 51 aa5.03□□□□□ -1.6
CPSF3-201ENST00000238112 KRTAP4-6Q9BYQ5 205 aa4.99□□□□□ -1.61
CPSF3-201ENST00000238112 KRTAP6-2Q3LI66 62 aa4.92□□□□□ -1.62
CPSF3-201ENST00000238112 MT3P25713 68 aa4.91□□□□□ -1.62
CPSF3-201ENST00000238112 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.9□□□□□ -1.63
CPSF3-201ENST00000238112 KRTAP6-3Q3LI67 103 aa4.86□□□□□ -1.63
CPSF3-201ENST00000238112 KRTAP5-4Q6L8H1 288 aa4.65□□□□□ -1.66
CPSF3-201ENST00000238112 OBSCNQ5VST9 7968 aa4.65□□□□□ -1.67
CPSF3-201ENST00000238112 KRTAP4-12Q9BQ66 201 aa4.45□□□□□ -1.7
CPSF3-201ENST00000238112 MT4P47944 62 aa4.45□□□□□ -1.7
CPSF3-201ENST00000238112 NEBP20929 6669 aa4.42□□□□□ -1.7
CPSF3-201ENST00000238112 KRTAP2-2Q9BYT5 123 aa4.41□□□□□ -1.7
CPSF3-201ENST00000238112 KRTAP20-2Q3LI61 65 aa4.38□□□□□ -1.71
CPSF3-201ENST00000238112 LCE4AQ5TA78 99 aa4.37□□□□□ -1.71
CPSF3-201ENST00000238112 KRTAP20-1Q3LI63 56 aa4.37□□□□□ -1.71
CPSF3-201ENST00000238112 KRTAP5-2Q701N4 177 aa4.36□□□□□ -1.71
CPSF3-201ENST00000238112 KRTAP9-9Q9BYP9 154 aa4.33□□□□□ -1.72
CPSF3-201ENST00000238112 HMCN1Q96RW7 5635 aa4.18□□□□□ -1.74
CPSF3-201ENST00000238112 LCE1DQ5T752 114 aa4.15□□□□□ -1.74
CPSF3-201ENST00000238112 KRTAP5-3Q6L8H2 238 aa4.15□□□□□ -1.75
CPSF3-201ENST00000238112 MUC5ACP98088 5654 aa4.07□□□□□ -1.76
CPSF3-201ENST00000238112 LCE1EQ5T753 118 aa3.99□□□□□ -1.77
CPSF3-201ENST00000238112 LCE1BQ5T7P3 118 aa3.95□□□□□ -1.78
CPSF3-201ENST00000238112 KRTAP4-2Q9BYR5 136 aa3.9□□□□□ -1.79
CPSF3-201ENST00000238112 KRTAP4-11Q9BYQ6 195 aa3.87□□□□□ -1.79
CPSF3-201ENST00000238112 KRTAP5-10Q6L8G5 202 aa3.86□□□□□ -1.79
CPSF3-201ENST00000238112 KRTAP5-1Q6L8H4 278 aa3.82□□□□□ -1.8
CPSF3-201ENST00000238112 LCE1CQ5T751 118 aa3.77□□□□□ -1.81
CPSF3-201ENST00000238112 GPR98Q8WXG9 6306 aa3.71□□□□□ -1.82
CPSF3-201ENST00000238112 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.55□□□□□ -1.84
CPSF3-201ENST00000238112 KRTAP21-2Q3LI59 83 aa3.53□□□□□ -1.84
CPSF3-201ENST00000238112 KRTAP5-8O75690 187 aa3.43□□□□□ -1.86
CPSF3-201ENST00000238112 KRTAP5-7Q6L8G8 165 aa3.39□□□□□ -1.87
CPSF3-201ENST00000238112 AHNAK2Q8IVF2 5795 aa3.31□□□□□ -1.88
CPSF3-201ENST00000238112 KRTAP5-11Q6L8G4 156 aa3.23□□□□□ -1.89
CPSF3-201ENST00000238112 KRTAP4-4Q9BYR3 166 aa3.22□□□□□ -1.89
CPSF3-201ENST00000238112 KRTAP21-1Q3LI58 79 aa3.15□□□□□ -1.9
CPSF3-201ENST00000238112 MUC5BQ9HC84 5762 aaPredicted RBP3.02□□□□□ -1.93
CPSF3-201ENST00000238112 MUC19Q7Z5P9 8384 aa2.97□□□□□ -1.93
CPSF3-201ENST00000238112 AHNAKQ09666 5890 aaKnown RBP2.92□□□□□ -1.94
CPSF3-201ENST00000238112 PHGR1C9JFL3 82 aa2.79□□□□□ -1.96
CPSF3-201ENST00000238112 LCE1FQ5T754 118 aa2.67□□□□□ -1.98
CPSF3-201ENST00000238112 MUC16Q8WXI7 14507 aa1.84□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 179.2 ms